Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 95539 | 0.66 | 0.775722 |
|
Target: 5'- gAGcGGGACGUuggCGGCGaCCCCCu- -3' miRNA: 3'- gUCcUCUUGCGuaaGCCGC-GGGGGua -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 119972 | 0.66 | 0.76632 |
|
Target: 5'- gAGaGAGcACGCGcgCGGCGCCCacgCCGg -3' miRNA: 3'- gUC-CUCuUGCGUaaGCCGCGGG---GGUa -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 82586 | 0.66 | 0.756799 |
|
Target: 5'- gGGGAGGACGUGUguuuugacCGGCGgUUCCAa -3' miRNA: 3'- gUCCUCUUGCGUAa-------GCCGCgGGGGUa -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 34104 | 0.67 | 0.707722 |
|
Target: 5'- cCAGGAGcGCGCcucgcUGGCGCCuCUCAa -3' miRNA: 3'- -GUCCUCuUGCGuaa--GCCGCGG-GGGUa -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 30632 | 0.67 | 0.687577 |
|
Target: 5'- gCAGGAGAuaACGCGUaauUCGaG-GUCCCCGg -3' miRNA: 3'- -GUCCUCU--UGCGUA---AGC-CgCGGGGGUa -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 40193 | 0.68 | 0.646803 |
|
Target: 5'- cCAGcGGGAUGCcgUC-GCGUCCCCAUa -3' miRNA: 3'- -GUCcUCUUGCGuaAGcCGCGGGGGUA- -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 111146 | 0.69 | 0.565186 |
|
Target: 5'- uCGGGAGGGCGC---CGGCcuucGCCCUCAg -3' miRNA: 3'- -GUCCUCUUGCGuaaGCCG----CGGGGGUa -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 79612 | 0.7 | 0.535163 |
|
Target: 5'- aAGaAGGACGCugacgUUGGgGCCCCCGUa -3' miRNA: 3'- gUCcUCUUGCGua---AGCCgCGGGGGUA- -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 76784 | 0.75 | 0.269599 |
|
Target: 5'- cCAGGAG-GCGguUuagCGGUGCCCCCGUc -3' miRNA: 3'- -GUCCUCuUGCguAa--GCCGCGGGGGUA- -5' |
|||||||
| 13303 | 5' | -58.5 | NC_003409.1 | + | 51053 | 1.04 | 0.002679 |
|
Target: 5'- gCAGGAGAACGCAUUCGGCGCCCCCAUc -3' miRNA: 3'- -GUCCUCUUGCGUAAGCCGCGGGGGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home