Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13305 | 3' | -54 | NC_003409.1 | + | 25933 | 0.74 | 0.530278 |
Target: 5'- cGGUUGGCCGgcGCGGCgUCGGuAUGGc -3' miRNA: 3'- -CCGAUCGGUauCGCCGgAGCU-UACUu -5' |
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13305 | 3' | -54 | NC_003409.1 | + | 52855 | 1.08 | 0.003523 |
Target: 5'- cGGCUAGCCAUAGCGGCCUCGAAUGAAc -3' miRNA: 3'- -CCGAUCGGUAUCGCCGGAGCUUACUU- -5' |
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13305 | 3' | -54 | NC_003409.1 | + | 68835 | 0.66 | 0.915101 |
Target: 5'- cGCUGGCCucucuUGGUGGCCgacacUCGcGAUGGc -3' miRNA: 3'- cCGAUCGGu----AUCGCCGG-----AGC-UUACUu -5' |
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13305 | 3' | -54 | NC_003409.1 | + | 79163 | 0.7 | 0.778167 |
Target: 5'- uGCUGGCCuUGGCGGUCggCGAgauuaccGUGGAc -3' miRNA: 3'- cCGAUCGGuAUCGCCGGa-GCU-------UACUU- -5' |
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13305 | 3' | -54 | NC_003409.1 | + | 85075 | 0.67 | 0.881023 |
Target: 5'- cGGCaGGCUGUGGUGGCUgCGAuaacggaGUGGAg -3' miRNA: 3'- -CCGaUCGGUAUCGCCGGaGCU-------UACUU- -5' |
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13305 | 3' | -54 | NC_003409.1 | + | 97140 | 0.69 | 0.825275 |
Target: 5'- cGGUUuauccaGGCCAaGGCGGCCg-GggUGAc -3' miRNA: 3'- -CCGA------UCGGUaUCGCCGGagCuuACUu -5' |
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13305 | 3' | -54 | NC_003409.1 | + | 127542 | 0.66 | 0.926671 |
Target: 5'- cGGCgcguGCCAUcGGUGGCCaUCGGcgGu- -3' miRNA: 3'- -CCGau--CGGUA-UCGCCGG-AGCUuaCuu -5' |
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13305 | 3' | -54 | NC_003409.1 | + | 128796 | 0.68 | 0.866715 |
Target: 5'- aGGUcaugGGCCA-AGgGGCCUUGAAUaGAAg -3' miRNA: 3'- -CCGa---UCGGUaUCgCCGGAGCUUA-CUU- -5' |
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13305 | 3' | -54 | NC_003409.1 | + | 129235 | 0.66 | 0.937213 |
Target: 5'- uGUaGGCCAUGGCGGCCgaGGAUu-- -3' miRNA: 3'- cCGaUCGGUAUCGCCGGagCUUAcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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