miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13305 5' -56.8 NC_003409.1 + 90070 0.66 0.883214
Target:  5'- gCUUCCUguggCGaauGCGCCUcGUGGUaGGCCUc -3'
miRNA:   3'- -GGAGGAa---GC---UGCGGGaUAUCG-CCGGA- -5'
13305 5' -56.8 NC_003409.1 + 5618 0.66 0.860609
Target:  5'- uCCUCCgaCGAUGuaugaauCCCUuUGGCuGGCCg -3'
miRNA:   3'- -GGAGGaaGCUGC-------GGGAuAUCG-CCGGa -5'
13305 5' -56.8 NC_003409.1 + 30776 0.66 0.85367
Target:  5'- aUCUCCUgcucaucgCGAcCGCUgccaaUAUAGUGGCCa -3'
miRNA:   3'- -GGAGGAa-------GCU-GCGGg----AUAUCGCCGGa -5'
13305 5' -56.8 NC_003409.1 + 112960 0.67 0.837679
Target:  5'- gUUCUcgCGugGCCCgc--GCGGCCc -3'
miRNA:   3'- gGAGGaaGCugCGGGauauCGCCGGa -5'
13305 5' -56.8 NC_003409.1 + 111901 0.68 0.776269
Target:  5'- gUCUCCgccaggGACGCCgaUAgGGCGGCCa -3'
miRNA:   3'- -GGAGGaag---CUGCGGg-AUaUCGCCGGa -5'
13305 5' -56.8 NC_003409.1 + 120200 0.68 0.776269
Target:  5'- gCgugCUUUCGACGUCCa--GGCGGCUg -3'
miRNA:   3'- gGa--GGAAGCUGCGGGauaUCGCCGGa -5'
13305 5' -56.8 NC_003409.1 + 109998 0.69 0.738172
Target:  5'- gCCUCCcgccgCGGCGUCUUGggcGGCGGaCCa -3'
miRNA:   3'- -GGAGGaa---GCUGCGGGAUa--UCGCC-GGa -5'
13305 5' -56.8 NC_003409.1 + 54550 0.7 0.678454
Target:  5'- aCCUCuCUcCGGCGUCUU-UGGCGGUCUc -3'
miRNA:   3'- -GGAG-GAaGCUGCGGGAuAUCGCCGGA- -5'
13305 5' -56.8 NC_003409.1 + 95593 0.7 0.627561
Target:  5'- uCCUCaga-GGCGUCCUccAGCGGCCc -3'
miRNA:   3'- -GGAGgaagCUGCGGGAuaUCGCCGGa -5'
13305 5' -56.8 NC_003409.1 + 110289 0.71 0.597
Target:  5'- aCCgUCCUUCGugGUgC---GGCGGCCa -3'
miRNA:   3'- -GG-AGGAAGCugCGgGauaUCGCCGGa -5'
13305 5' -56.8 NC_003409.1 + 51943 0.73 0.482517
Target:  5'- uCCUCCaaagggugggcuaCGGCGCCCUcUGGCGGCg- -3'
miRNA:   3'- -GGAGGaa-----------GCUGCGGGAuAUCGCCGga -5'
13305 5' -56.8 NC_003409.1 + 52821 1.08 0.002466
Target:  5'- uCCUCCUUCGACGCCCUAUAGCGGCCUu -3'
miRNA:   3'- -GGAGGAAGCUGCGGGAUAUCGCCGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.