Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13305 | 5' | -56.8 | NC_003409.1 | + | 90070 | 0.66 | 0.883214 |
Target: 5'- gCUUCCUguggCGaauGCGCCUcGUGGUaGGCCUc -3' miRNA: 3'- -GGAGGAa---GC---UGCGGGaUAUCG-CCGGA- -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 5618 | 0.66 | 0.860609 |
Target: 5'- uCCUCCgaCGAUGuaugaauCCCUuUGGCuGGCCg -3' miRNA: 3'- -GGAGGaaGCUGC-------GGGAuAUCG-CCGGa -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 30776 | 0.66 | 0.85367 |
Target: 5'- aUCUCCUgcucaucgCGAcCGCUgccaaUAUAGUGGCCa -3' miRNA: 3'- -GGAGGAa-------GCU-GCGGg----AUAUCGCCGGa -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 112960 | 0.67 | 0.837679 |
Target: 5'- gUUCUcgCGugGCCCgc--GCGGCCc -3' miRNA: 3'- gGAGGaaGCugCGGGauauCGCCGGa -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 111901 | 0.68 | 0.776269 |
Target: 5'- gUCUCCgccaggGACGCCgaUAgGGCGGCCa -3' miRNA: 3'- -GGAGGaag---CUGCGGg-AUaUCGCCGGa -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 120200 | 0.68 | 0.776269 |
Target: 5'- gCgugCUUUCGACGUCCa--GGCGGCUg -3' miRNA: 3'- gGa--GGAAGCUGCGGGauaUCGCCGGa -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 109998 | 0.69 | 0.738172 |
Target: 5'- gCCUCCcgccgCGGCGUCUUGggcGGCGGaCCa -3' miRNA: 3'- -GGAGGaa---GCUGCGGGAUa--UCGCC-GGa -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 54550 | 0.7 | 0.678454 |
Target: 5'- aCCUCuCUcCGGCGUCUU-UGGCGGUCUc -3' miRNA: 3'- -GGAG-GAaGCUGCGGGAuAUCGCCGGA- -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 95593 | 0.7 | 0.627561 |
Target: 5'- uCCUCaga-GGCGUCCUccAGCGGCCc -3' miRNA: 3'- -GGAGgaagCUGCGGGAuaUCGCCGGa -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 110289 | 0.71 | 0.597 |
Target: 5'- aCCgUCCUUCGugGUgC---GGCGGCCa -3' miRNA: 3'- -GG-AGGAAGCugCGgGauaUCGCCGGa -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 51943 | 0.73 | 0.482517 |
Target: 5'- uCCUCCaaagggugggcuaCGGCGCCCUcUGGCGGCg- -3' miRNA: 3'- -GGAGGaa-----------GCUGCGGGAuAUCGCCGga -5' |
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13305 | 5' | -56.8 | NC_003409.1 | + | 52821 | 1.08 | 0.002466 |
Target: 5'- uCCUCCUUCGACGCCCUAUAGCGGCCUu -3' miRNA: 3'- -GGAGGAAGCUGCGGGAUAUCGCCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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