miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13306 3' -53.8 NC_003409.1 + 131467 0.66 0.961167
Target:  5'- aCCUGGGCAGccuaAGgGCCAUGUgccuugggAGUCaGCu -3'
miRNA:   3'- -GGGCCUGUC----UUgCGGUACA--------UCAGgUG- -5'
13306 3' -53.8 NC_003409.1 + 78973 0.66 0.957489
Target:  5'- --gGGACuGGAGCGCacUGUcGUCCACg -3'
miRNA:   3'- gggCCUG-UCUUGCGguACAuCAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 20430 0.66 0.957489
Target:  5'- --aGGGCGGaAGCGCCAUcaacgacaAGUCCGCc -3'
miRNA:   3'- gggCCUGUC-UUGCGGUAca------UCAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 86783 0.66 0.953579
Target:  5'- gCCaCGGAUAGGcgGCGCCcga-GGUCCAg -3'
miRNA:   3'- -GG-GCCUGUCU--UGCGGuacaUCAGGUg -5'
13306 3' -53.8 NC_003409.1 + 90151 0.66 0.949434
Target:  5'- gCCGGcguCuGGACGCCGgcgGcAGUCCAg -3'
miRNA:   3'- gGGCCu--GuCUUGCGGUa--CaUCAGGUg -5'
13306 3' -53.8 NC_003409.1 + 104217 0.66 0.949434
Target:  5'- aUCGGACAGGACGCgGcca--UCCGCg -3'
miRNA:   3'- gGGCCUGUCUUGCGgUacaucAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 60530 0.66 0.94505
Target:  5'- gUCCGGACAGcguCGCUuccgGUGGUUCu- -3'
miRNA:   3'- -GGGCCUGUCuu-GCGGua--CAUCAGGug -5'
13306 3' -53.8 NC_003409.1 + 12220 0.66 0.94505
Target:  5'- aCCCGuGGucCAGcacgaAGCGCCuaAUGgcGUCCACa -3'
miRNA:   3'- -GGGC-CU--GUC-----UUGCGG--UACauCAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 73609 0.67 0.925077
Target:  5'- aCCGGAgGGGAguUGCC-UGUAaugucagcGUCCACu -3'
miRNA:   3'- gGGCCUgUCUU--GCGGuACAU--------CAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 14244 0.67 0.924527
Target:  5'- -aCGGuCAGGugcgggagguuuuGCGUCuUGUAGUCCGCc -3'
miRNA:   3'- ggGCCuGUCU-------------UGCGGuACAUCAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 26954 0.68 0.904374
Target:  5'- aUCCGGAgGGAaggaagggcggggcGCGCCGUGUuuuggacaacuuGUCCGg -3'
miRNA:   3'- -GGGCCUgUCU--------------UGCGGUACAu-----------CAGGUg -5'
13306 3' -53.8 NC_003409.1 + 133475 0.68 0.880722
Target:  5'- gCCGGugAGGGCcCCcUGUGucuGUCCGCc -3'
miRNA:   3'- gGGCCugUCUUGcGGuACAU---CAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 9811 0.69 0.873443
Target:  5'- gUCUGGAUGGAGCGCgGgaagGUuuUCCACa -3'
miRNA:   3'- -GGGCCUGUCUUGCGgUa---CAucAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 37135 0.69 0.872703
Target:  5'- aUUGGACAGGAucUGCC-UGUagauuucGGUCCACa -3'
miRNA:   3'- gGGCCUGUCUU--GCGGuACA-------UCAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 43893 0.69 0.858223
Target:  5'- -aCGG-CAGAGCGUUggGaUGGUCCACu -3'
miRNA:   3'- ggGCCuGUCUUGCGGuaC-AUCAGGUG- -5'
13306 3' -53.8 NC_003409.1 + 98170 0.7 0.833829
Target:  5'- aCUGGACAGGgcucgugccaggGCGCCGuuUGUAGaCCAg -3'
miRNA:   3'- gGGCCUGUCU------------UGCGGU--ACAUCaGGUg -5'
13306 3' -53.8 NC_003409.1 + 108694 0.7 0.833829
Target:  5'- --gGGACAGGAgGCCAUGgcGgCCAUu -3'
miRNA:   3'- gggCCUGUCUUgCGGUACauCaGGUG- -5'
13306 3' -53.8 NC_003409.1 + 95904 0.7 0.798698
Target:  5'- aCCCGGcuCAGGGCGUCgGUGUGcaCCACg -3'
miRNA:   3'- -GGGCCu-GUCUUGCGG-UACAUcaGGUG- -5'
13306 3' -53.8 NC_003409.1 + 61130 0.71 0.738567
Target:  5'- cUCUGGACAGGGCGuCCGUGcAGUgggaccuauuugaaCCGCa -3'
miRNA:   3'- -GGGCCUGUCUUGC-GGUACaUCA--------------GGUG- -5'
13306 3' -53.8 NC_003409.1 + 52076 0.73 0.629006
Target:  5'- uCCCGGAgccucGAGCGCCAUGUGGUgagUgGCg -3'
miRNA:   3'- -GGGCCUgu---CUUGCGGUACAUCA---GgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.