miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13307 3' -58.5 NC_003409.1 + 133128 0.66 0.760082
Target:  5'- gUGCGCACccaccugccugcggaUC-CCGCGGCCGGUCc- -3'
miRNA:   3'- uGCGCGUGc--------------AGaGGUGCCGGCUAGuu -5'
13307 3' -58.5 NC_003409.1 + 67714 0.67 0.73016
Target:  5'- -gGCGCGCGUCgguaaaCGCGGCC--UCAu -3'
miRNA:   3'- ugCGCGUGCAGag----GUGCCGGcuAGUu -5'
13307 3' -58.5 NC_003409.1 + 133436 0.68 0.649854
Target:  5'- gUGCGCACGgggUC-CCAgGGCCGGUUc- -3'
miRNA:   3'- uGCGCGUGC---AGaGGUgCCGGCUAGuu -5'
13307 3' -58.5 NC_003409.1 + 11882 0.69 0.609088
Target:  5'- uCGCGCauccuGCGgcuUCUCCAcCGaGCCGGUCAGa -3'
miRNA:   3'- uGCGCG-----UGC---AGAGGU-GC-CGGCUAGUU- -5'
13307 3' -58.5 NC_003409.1 + 54429 1.05 0.00256
Target:  5'- gACGCGCACGUCUCCACGGCCGAUCAAc -3'
miRNA:   3'- -UGCGCGUGCAGAGGUGCCGGCUAGUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.