Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13307 | 5' | -52.5 | NC_003409.1 | + | 120214 | 0.73 | 0.704171 |
Target: 5'- -uCCAGGCGGCU-----GGCACACGGg -3' miRNA: 3'- auGGUCCGCCGGucuuuUUGUGUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 119796 | 0.67 | 0.954176 |
Target: 5'- gUGCCAGGCgccGGCguGGGcgccGCGCGCGu -3' miRNA: 3'- -AUGGUCCG---CCGguCUUuu--UGUGUGCu -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 121374 | 0.66 | 0.958153 |
Target: 5'- cACCAGGCGGCguugu-GGC-CACGGg -3' miRNA: 3'- aUGGUCCGCCGgucuuuUUGuGUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 78721 | 0.66 | 0.971686 |
Target: 5'- -uCCAGGguugacgaaGGCCGGGGAggGAUugACGAa -3' miRNA: 3'- auGGUCCg--------CCGGUCUUU--UUGugUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 109917 | 0.69 | 0.871724 |
Target: 5'- cGCCuGGuCGGCCAGGcgcaGGAACGCucugGCGGc -3' miRNA: 3'- aUGGuCC-GCCGGUCU----UUUUGUG----UGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 91948 | 0.69 | 0.879251 |
Target: 5'- gGCC-GGCGGcCCAGAAAcaGGgACGCGu -3' miRNA: 3'- aUGGuCCGCC-GGUCUUU--UUgUGUGCu -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 5590 | 0.69 | 0.893582 |
Target: 5'- cUACCAGGUGuCuCGGggGAACACcuaACGGa -3' miRNA: 3'- -AUGGUCCGCcG-GUCuuUUUGUG---UGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 18147 | 0.68 | 0.900376 |
Target: 5'- gGCCAGG-GGCCAGu-GAGCGCcuccCGGu -3' miRNA: 3'- aUGGUCCgCCGGUCuuUUUGUGu---GCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 134346 | 0.68 | 0.91923 |
Target: 5'- -gUCAGGCuGCC-GAGAAACcCGCGAg -3' miRNA: 3'- auGGUCCGcCGGuCUUUUUGuGUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 132679 | 0.67 | 0.940743 |
Target: 5'- aGCCAGGgGGaCGGggGggUGgACGAc -3' miRNA: 3'- aUGGUCCgCCgGUCuuUuuGUgUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 60005 | 0.68 | 0.91923 |
Target: 5'- gUACguGGCGGCCAu----GgGCACGAc -3' miRNA: 3'- -AUGguCCGCCGGUcuuuuUgUGUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 87495 | 0.68 | 0.906917 |
Target: 5'- cACCGGuuuccCGGCgGGGAAGccACGCGCGAg -3' miRNA: 3'- aUGGUCc----GCCGgUCUUUU--UGUGUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 20641 | 0.71 | 0.811973 |
Target: 5'- cGCCAGGCcgcgcccGGCCAGGAAcuCcCugGAg -3' miRNA: 3'- aUGGUCCG-------CCGGUCUUUuuGuGugCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 10432 | 0.68 | 0.930507 |
Target: 5'- aACCAGGUGGaaaCCuGcAAAGACACcuGCGAa -3' miRNA: 3'- aUGGUCCGCC---GGuC-UUUUUGUG--UGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 119494 | 0.71 | 0.812885 |
Target: 5'- gGCCAauGGCGGCuCGGAAAacuuuGAUugACGGg -3' miRNA: 3'- aUGGU--CCGCCG-GUCUUU-----UUGugUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 33461 | 0.68 | 0.900376 |
Target: 5'- cGCCucgaGGGCGGCCAGuauuaugccaggGAAGAUgaaggACACGGg -3' miRNA: 3'- aUGG----UCCGCCGGUC------------UUUUUG-----UGUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 45626 | 0.67 | 0.935755 |
Target: 5'- cACCAGGCuccccaaCCAGAGAAACGCGg-- -3' miRNA: 3'- aUGGUCCGcc-----GGUCUUUUUGUGUgcu -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 32146 | 0.67 | 0.954176 |
Target: 5'- aGCCuGGauGCCAGcucuagGAAGGCugGCGAc -3' miRNA: 3'- aUGGuCCgcCGGUC------UUUUUGugUGCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 4371 | 0.69 | 0.863963 |
Target: 5'- cUGCCuucaaGGGCGuGCCAGugucuGCACugGAu -3' miRNA: 3'- -AUGG-----UCCGC-CGGUCuuuu-UGUGugCU- -5' |
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13307 | 5' | -52.5 | NC_003409.1 | + | 60138 | 0.69 | 0.892889 |
Target: 5'- cGCCAGGCGGCgcugcggCGGGAGAGC-CAaucUGAu -3' miRNA: 3'- aUGGUCCGCCG-------GUCUUUUUGuGU---GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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