miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13307 5' -52.5 NC_003409.1 + 10432 0.68 0.930507
Target:  5'- aACCAGGUGGaaaCCuGcAAAGACACcuGCGAa -3'
miRNA:   3'- aUGGUCCGCC---GGuC-UUUUUGUG--UGCU- -5'
13307 5' -52.5 NC_003409.1 + 75167 0.68 0.924999
Target:  5'- cACCGGGCGcGCCacuuuGGGAAGGCGCu--- -3'
miRNA:   3'- aUGGUCCGC-CGG-----UCUUUUUGUGugcu -5'
13307 5' -52.5 NC_003409.1 + 102604 0.68 0.923296
Target:  5'- ----uGGgGGCCGGAGggacgaagaaugcuGAGCACGCGAu -3'
miRNA:   3'- augguCCgCCGGUCUU--------------UUUGUGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 134346 0.68 0.91923
Target:  5'- -gUCAGGCuGCC-GAGAAACcCGCGAg -3'
miRNA:   3'- auGGUCCGcCGGuCUUUUUGuGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 54888 0.68 0.91923
Target:  5'- -uUCGGGCGGCgggugaGGAAAucGCACugGAc -3'
miRNA:   3'- auGGUCCGCCGg-----UCUUUu-UGUGugCU- -5'
13307 5' -52.5 NC_003409.1 + 60005 0.68 0.91923
Target:  5'- gUACguGGCGGCCAu----GgGCACGAc -3'
miRNA:   3'- -AUGguCCGCCGGUcuuuuUgUGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 87495 0.68 0.906917
Target:  5'- cACCGGuuuccCGGCgGGGAAGccACGCGCGAg -3'
miRNA:   3'- aUGGUCc----GCCGgUCUUUU--UGUGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 33461 0.68 0.900376
Target:  5'- cGCCucgaGGGCGGCCAGuauuaugccaggGAAGAUgaaggACACGGg -3'
miRNA:   3'- aUGG----UCCGCCGGUC------------UUUUUG-----UGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 18147 0.68 0.900376
Target:  5'- gGCCAGG-GGCCAGu-GAGCGCcuccCGGu -3'
miRNA:   3'- aUGGUCCgCCGGUCuuUUUGUGu---GCU- -5'
13307 5' -52.5 NC_003409.1 + 5590 0.69 0.893582
Target:  5'- cUACCAGGUGuCuCGGggGAACACcuaACGGa -3'
miRNA:   3'- -AUGGUCCGCcG-GUCuuUUUGUG---UGCU- -5'
13307 5' -52.5 NC_003409.1 + 40300 0.69 0.893582
Target:  5'- aGCCAGucguacGCGGCCAcGAAuucgaGGACACGCa- -3'
miRNA:   3'- aUGGUC------CGCCGGU-CUU-----UUUGUGUGcu -5'
13307 5' -52.5 NC_003409.1 + 60138 0.69 0.892889
Target:  5'- cGCCAGGCGGCgcugcggCGGGAGAGC-CAaucUGAu -3'
miRNA:   3'- aUGGUCCGCCG-------GUCUUUUUGuGU---GCU- -5'
13307 5' -52.5 NC_003409.1 + 91948 0.69 0.879251
Target:  5'- gGCC-GGCGGcCCAGAAAcaGGgACGCGu -3'
miRNA:   3'- aUGGuCCGCC-GGUCUUU--UUgUGUGCu -5'
13307 5' -52.5 NC_003409.1 + 109917 0.69 0.871724
Target:  5'- cGCCuGGuCGGCCAGGcgcaGGAACGCucugGCGGc -3'
miRNA:   3'- aUGGuCC-GCCGGUCU----UUUUGUG----UGCU- -5'
13307 5' -52.5 NC_003409.1 + 4371 0.69 0.863963
Target:  5'- cUGCCuucaaGGGCGuGCCAGugucuGCACugGAu -3'
miRNA:   3'- -AUGG-----UCCGC-CGGUCuuuu-UGUGugCU- -5'
13307 5' -52.5 NC_003409.1 + 79914 0.7 0.830718
Target:  5'- aGCCAGGCcaccuGGCUcuGGAAAGuGCACGCGu -3'
miRNA:   3'- aUGGUCCG-----CCGG--UCUUUU-UGUGUGCu -5'
13307 5' -52.5 NC_003409.1 + 119494 0.71 0.812885
Target:  5'- gGCCAauGGCGGCuCGGAAAacuuuGAUugACGGg -3'
miRNA:   3'- aUGGU--CCGCCG-GUCUUU-----UUGugUGCU- -5'
13307 5' -52.5 NC_003409.1 + 109425 0.71 0.812885
Target:  5'- aUACgCAcaUGGCCAGGAAAGCAUugGAg -3'
miRNA:   3'- -AUG-GUccGCCGGUCUUUUUGUGugCU- -5'
13307 5' -52.5 NC_003409.1 + 23516 0.71 0.812885
Target:  5'- gGCCAauGGCGGCuCGGAAAacuuuGAUugACGGg -3'
miRNA:   3'- aUGGU--CCGCCG-GUCUUU-----UUGugUGCU- -5'
13307 5' -52.5 NC_003409.1 + 20641 0.71 0.811973
Target:  5'- cGCCAGGCcgcgcccGGCCAGGAAcuCcCugGAg -3'
miRNA:   3'- aUGGUCCG-------CCGGUCUUUuuGuGugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.