Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13308 | 3' | -49.3 | NC_003409.1 | + | 88200 | 0.67 | 0.98736 |
Target: 5'- uGGCGc-CUUAGGGgGAGCAggUGCUGCa -3' miRNA: 3'- cUCGCucGAGUUUCgUUUGU--ACGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 40976 | 0.67 | 0.985623 |
Target: 5'- uGGGCGccAGCUCGuGGCGAaucuguuccACAagagGCUGCc -3' miRNA: 3'- -CUCGC--UCGAGUuUCGUU---------UGUa---CGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 131631 | 0.68 | 0.976807 |
Target: 5'- cGAGCGGGUUaggguGGGCGggUAgugagaGCUGCa -3' miRNA: 3'- -CUCGCUCGAgu---UUCGUuuGUa-----CGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 110851 | 0.68 | 0.974087 |
Target: 5'- gGAGCccaaagGGGUUCuccAAAGCAAACguggaacucucGUGCUGCg -3' miRNA: 3'- -CUCG------CUCGAG---UUUCGUUUG-----------UACGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 95421 | 0.69 | 0.960884 |
Target: 5'- aGAGCGcGCUCAcuguccAGGCGGcACAUGgUGUc -3' miRNA: 3'- -CUCGCuCGAGU------UUCGUU-UGUACgACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 115586 | 0.7 | 0.948343 |
Target: 5'- --aCGAGCUCAGAGCuccuuGACGaGCcGCg -3' miRNA: 3'- cucGCUCGAGUUUCGu----UUGUaCGaCG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 44775 | 0.72 | 0.888901 |
Target: 5'- aGGCGAGCUCAucgcccuuGAGCAGGCGcuucucaaGCUcGCg -3' miRNA: 3'- cUCGCUCGAGU--------UUCGUUUGUa-------CGA-CG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 99481 | 0.73 | 0.856843 |
Target: 5'- uGAGCGcaguauuGGCguggCGcAGCAcACGUGCUGCg -3' miRNA: 3'- -CUCGC-------UCGa---GUuUCGUuUGUACGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 8909 | 0.67 | 0.986856 |
Target: 5'- cGGgGAGCUUuuucgguucaaccuGGAGCAGACGUGCc-- -3' miRNA: 3'- cUCgCUCGAG--------------UUUCGUUUGUACGacg -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 116737 | 0.66 | 0.993753 |
Target: 5'- uGGGCGAugcGCUCAAAaaaaauaaCGAGCAUGCUcgguaGCg -3' miRNA: 3'- -CUCGCU---CGAGUUUc-------GUUUGUACGA-----CG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 108089 | 0.67 | 0.98736 |
Target: 5'- cGGGCGGacuucgagucGCUCgAGAGCG-ACAUGC-GCg -3' miRNA: 3'- -CUCGCU----------CGAG-UUUCGUuUGUACGaCG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 71731 | 0.66 | 0.992746 |
Target: 5'- cGGGCGGuGCUUuucaggAGAGUuagGGACGUGCUGa -3' miRNA: 3'- -CUCGCU-CGAG------UUUCG---UUUGUACGACg -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 127258 | 0.67 | 0.990344 |
Target: 5'- aGGGgGAGCUCucagacaauuAAGCGguuacacacaguAGCAgGCUGCa -3' miRNA: 3'- -CUCgCUCGAGu---------UUCGU------------UUGUaCGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 120291 | 0.66 | 0.995431 |
Target: 5'- cGGUGGcGCUCAAcGCcAAUAUGCgcgGCu -3' miRNA: 3'- cUCGCU-CGAGUUuCGuUUGUACGa--CG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 24740 | 0.69 | 0.971143 |
Target: 5'- gGAGgGGGCgcgcCGGGGCuccuGGgGUGCUGCc -3' miRNA: 3'- -CUCgCUCGa---GUUUCGu---UUgUACGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 134195 | 0.66 | 0.995431 |
Target: 5'- aGGCGGucuguGC-CAcggggGAGCGAGCGUGUUGUa -3' miRNA: 3'- cUCGCU-----CGaGU-----UUCGUUUGUACGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 41679 | 0.68 | 0.983709 |
Target: 5'- uGGGC-AGCUCuacaguGuCAGACAUGCUGg -3' miRNA: 3'- -CUCGcUCGAGuuu---C-GUUUGUACGACg -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 65776 | 0.68 | 0.979311 |
Target: 5'- aGGUGAGCacauuaUCAcAGGCAGAUAucucguuucucUGCUGCg -3' miRNA: 3'- cUCGCUCG------AGU-UUCGUUUGU-----------ACGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 54778 | 1.13 | 0.005066 |
Target: 5'- cGAGCGAGCUCAAAGCAAACAUGCUGCu -3' miRNA: 3'- -CUCGCUCGAGUUUCGUUUGUACGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 108247 | 0.71 | 0.922048 |
Target: 5'- cGAGCGA-CUCGAAGUccGCccGCUGUa -3' miRNA: 3'- -CUCGCUcGAGUUUCGuuUGuaCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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