Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13308 | 3' | -49.3 | NC_003409.1 | + | 110851 | 0.68 | 0.974087 |
Target: 5'- gGAGCccaaagGGGUUCuccAAAGCAAACguggaacucucGUGCUGCg -3' miRNA: 3'- -CUCG------CUCGAG---UUUCGUUUG-----------UACGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 115586 | 0.7 | 0.948343 |
Target: 5'- --aCGAGCUCAGAGCuccuuGACGaGCcGCg -3' miRNA: 3'- cucGCUCGAGUUUCGu----UUGUaCGaCG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 116737 | 0.66 | 0.993753 |
Target: 5'- uGGGCGAugcGCUCAAAaaaaauaaCGAGCAUGCUcgguaGCg -3' miRNA: 3'- -CUCGCU---CGAGUUUc-------GUUUGUACGA-----CG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 120291 | 0.66 | 0.995431 |
Target: 5'- cGGUGGcGCUCAAcGCcAAUAUGCgcgGCu -3' miRNA: 3'- cUCGCU-CGAGUUuCGuUUGUACGa--CG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 127258 | 0.67 | 0.990344 |
Target: 5'- aGGGgGAGCUCucagacaauuAAGCGguuacacacaguAGCAgGCUGCa -3' miRNA: 3'- -CUCgCUCGAGu---------UUCGU------------UUGUaCGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 131631 | 0.68 | 0.976807 |
Target: 5'- cGAGCGGGUUaggguGGGCGggUAgugagaGCUGCa -3' miRNA: 3'- -CUCGCUCGAgu---UUCGUuuGUa-----CGACG- -5' |
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13308 | 3' | -49.3 | NC_003409.1 | + | 134195 | 0.66 | 0.995431 |
Target: 5'- aGGCGGucuguGC-CAcggggGAGCGAGCGUGUUGUa -3' miRNA: 3'- cUCGCU-----CGaGU-----UUCGUUUGUACGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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