miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13308 5' -60.8 NC_003409.1 + 113482 0.66 0.65662
Target:  5'- uGGuGAcgcugucccGUGCCcagGCCGCCGACCaUGCu -3'
miRNA:   3'- uCC-CU---------CGCGGaa-CGGCGGUUGG-ACGu -5'
13308 5' -60.8 NC_003409.1 + 109910 0.66 0.65662
Target:  5'- cGGcGAGCGCCUgGUCGgCCAGgC-GCAg -3'
miRNA:   3'- uCC-CUCGCGGAaCGGC-GGUUgGaCGU- -5'
13308 5' -60.8 NC_003409.1 + 24738 0.66 0.652574
Target:  5'- aGGGGGcGCGCCggggcuccuggggUGCUGCCGGggcuCCUGgGg -3'
miRNA:   3'- -UCCCU-CGCGGa------------ACGGCGGUU----GGACgU- -5'
13308 5' -60.8 NC_003409.1 + 46099 0.66 0.646501
Target:  5'- aGGGGAcGCGUaucagGaCCGCCAG-CUGCAu -3'
miRNA:   3'- -UCCCU-CGCGgaa--C-GGCGGUUgGACGU- -5'
13308 5' -60.8 NC_003409.1 + 14233 0.66 0.616111
Target:  5'- cGGGAgguuuuGCGUCUUGuaguCCGCCAGCggGCGg -3'
miRNA:   3'- uCCCU------CGCGGAAC----GGCGGUUGgaCGU- -5'
13308 5' -60.8 NC_003409.1 + 107924 0.66 0.616111
Target:  5'- -uGGAGCGCgUgGCUaaGCCucaguGCCUGCAc -3'
miRNA:   3'- ucCCUCGCGgAaCGG--CGGu----UGGACGU- -5'
13308 5' -60.8 NC_003409.1 + 108727 0.66 0.605995
Target:  5'- uAGGGAcuCGCCccaGCUaGCUGGCCUGCAg -3'
miRNA:   3'- -UCCCUc-GCGGaa-CGG-CGGUUGGACGU- -5'
13308 5' -60.8 NC_003409.1 + 45478 0.67 0.585826
Target:  5'- --cGGGCGUa-UGUCGCCuGCCUGCAg -3'
miRNA:   3'- uccCUCGCGgaACGGCGGuUGGACGU- -5'
13308 5' -60.8 NC_003409.1 + 46965 0.67 0.565789
Target:  5'- uAGGGAGCGUacUGCCGCuCGGagaUUGCc -3'
miRNA:   3'- -UCCCUCGCGgaACGGCG-GUUg--GACGu -5'
13308 5' -60.8 NC_003409.1 + 79231 0.67 0.555835
Target:  5'- gGGGGAG-GCCcaaaucuaucucUUGCCGCCAGCgcuCUGg- -3'
miRNA:   3'- -UCCCUCgCGG------------AACGGCGGUUG---GACgu -5'
13308 5' -60.8 NC_003409.1 + 51988 0.67 0.544946
Target:  5'- cGGGuGAGUGCCggGUccggcguagcacgCGCCAGCCUcuGCAg -3'
miRNA:   3'- -UCC-CUCGCGGaaCG-------------GCGGUUGGA--CGU- -5'
13308 5' -60.8 NC_003409.1 + 32114 0.68 0.50695
Target:  5'- cGGGGGCucugGCCacgugggaggUGuCCGCCAGCCUGgAu -3'
miRNA:   3'- uCCCUCG----CGGa---------AC-GGCGGUUGGACgU- -5'
13308 5' -60.8 NC_003409.1 + 82889 0.68 0.498339
Target:  5'- uGGGuGAGuUGCCgucgagaaaccgcaGCCGCCGgagGCCUGCAa -3'
miRNA:   3'- -UCC-CUC-GCGGaa------------CGGCGGU---UGGACGU- -5'
13308 5' -60.8 NC_003409.1 + 25602 0.69 0.478508
Target:  5'- gGGGGGGUGUauacGCUGCgaaAACCUGCAc -3'
miRNA:   3'- -UCCCUCGCGgaa-CGGCGg--UUGGACGU- -5'
13308 5' -60.8 NC_003409.1 + 123295 0.69 0.459988
Target:  5'- cAGGGAGCGCC-UGCCuGUUAgugGCCaGUAa -3'
miRNA:   3'- -UCCCUCGCGGaACGG-CGGU---UGGaCGU- -5'
13308 5' -60.8 NC_003409.1 + 87932 0.69 0.450872
Target:  5'- uGGGcGGCGCCgUGCCcgGUaGGCCUGCAc -3'
miRNA:   3'- uCCC-UCGCGGaACGG--CGgUUGGACGU- -5'
13308 5' -60.8 NC_003409.1 + 30515 0.69 0.449966
Target:  5'- cAGGGcuCGCCcccagUucauguuuccaucGCCGCUAACCUGCAg -3'
miRNA:   3'- -UCCCucGCGGa----A-------------CGGCGGUUGGACGU- -5'
13308 5' -60.8 NC_003409.1 + 19453 0.7 0.424136
Target:  5'- uGGGGGCcgcugGCCUUGCCGCUgcGACgUGgGu -3'
miRNA:   3'- uCCCUCG-----CGGAACGGCGG--UUGgACgU- -5'
13308 5' -60.8 NC_003409.1 + 55283 0.7 0.424136
Target:  5'- uGGGcGGCGgCUUGCCGCCcGCCa--- -3'
miRNA:   3'- uCCC-UCGCgGAACGGCGGuUGGacgu -5'
13308 5' -60.8 NC_003409.1 + 54741 1.08 0.0009
Target:  5'- cAGGGAGCGCCUUGCCGCCAACCUGCAg -3'
miRNA:   3'- -UCCCUCGCGGAACGGCGGUUGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.