Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13309 | 3' | -53.7 | NC_003409.1 | + | 102483 | 0.66 | 0.963026 |
Target: 5'- cGCGUguaCGCCGCgCUgcCCUCGCAacucaUGCg -3' miRNA: 3'- -UGCAaaaGUGGUG-GA--GGAGCGUg----GCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 133478 | 0.66 | 0.955666 |
Target: 5'- uGCGcaccaUCGCCACCacUCCUgGCAaCGCc -3' miRNA: 3'- -UGCaaa--AGUGGUGG--AGGAgCGUgGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 67970 | 0.66 | 0.955666 |
Target: 5'- uCGUgg-CGCC-CC-CUgCGCGCCGCa -3' miRNA: 3'- uGCAaaaGUGGuGGaGGaGCGUGGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 3356 | 0.66 | 0.951637 |
Target: 5'- --aUUUUCACUACCUCUuUUGCACgGg -3' miRNA: 3'- ugcAAAAGUGGUGGAGG-AGCGUGgCg -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 9946 | 0.66 | 0.951637 |
Target: 5'- cACGUcaUCGCCGCCccCCUCcGCAUCc- -3' miRNA: 3'- -UGCAaaAGUGGUGGa-GGAG-CGUGGcg -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 22242 | 0.66 | 0.951637 |
Target: 5'- cGCGUg--CGCCGCUUCgCagGCGacCCGCa -3' miRNA: 3'- -UGCAaaaGUGGUGGAG-GagCGU--GGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 42758 | 0.67 | 0.94286 |
Target: 5'- -----cUgGCCACCaaCUCGCACCuGCa -3' miRNA: 3'- ugcaaaAgUGGUGGagGAGCGUGG-CG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 36544 | 0.67 | 0.937618 |
Target: 5'- gACGUggUCGCCAuucucacCCUCUccaGCGCCGa -3' miRNA: 3'- -UGCAaaAGUGGU-------GGAGGag-CGUGGCg -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 3220 | 0.67 | 0.927861 |
Target: 5'- uGCGUggUCACCGCC-CCUaaaauagccaaUGCACUugGCc -3' miRNA: 3'- -UGCAaaAGUGGUGGaGGA-----------GCGUGG--CG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 50955 | 0.68 | 0.910637 |
Target: 5'- -----cUCGCCACaCUCUucauuUCGCACCGg -3' miRNA: 3'- ugcaaaAGUGGUG-GAGG-----AGCGUGGCg -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 18864 | 0.68 | 0.904405 |
Target: 5'- -gGUUcUC-CCGCUUCCUUGUACCcuGCa -3' miRNA: 3'- ugCAAaAGuGGUGGAGGAGCGUGG--CG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 99676 | 0.68 | 0.904405 |
Target: 5'- uACGUUUUUG--GCUaCCUCGCugCGCa -3' miRNA: 3'- -UGCAAAAGUggUGGaGGAGCGugGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 32750 | 0.68 | 0.891215 |
Target: 5'- uGCGUcccaggACCACCUCgUCGUAggucCCGCa -3' miRNA: 3'- -UGCAaaag--UGGUGGAGgAGCGU----GGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 8927 | 0.68 | 0.891215 |
Target: 5'- gACGUcugaaaggugUCACC-CCUCgagUGCGCCGCg -3' miRNA: 3'- -UGCAaa--------AGUGGuGGAGga-GCGUGGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 107239 | 0.69 | 0.862047 |
Target: 5'- aACGUg-UCGCCAcCCUCCugcaacaggcUCcCACCGCg -3' miRNA: 3'- -UGCAaaAGUGGU-GGAGG----------AGcGUGGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 109615 | 0.7 | 0.829451 |
Target: 5'- uGCGUg--CGCCGCCUCCgcgUGCgaagGCUGUu -3' miRNA: 3'- -UGCAaaaGUGGUGGAGGa--GCG----UGGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 46103 | 0.7 | 0.820818 |
Target: 5'- -----gUCACCGCgUCCgaacguaccUCGCGCCGUa -3' miRNA: 3'- ugcaaaAGUGGUGgAGG---------AGCGUGGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 79073 | 0.7 | 0.803028 |
Target: 5'- -gGUUUUCACgGUCUCCUgGCAgcCCGCc -3' miRNA: 3'- ugCAAAAGUGgUGGAGGAgCGU--GGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 38138 | 0.71 | 0.784598 |
Target: 5'- uAUGUccggCGCCGCCUCUUgaGCugCGCa -3' miRNA: 3'- -UGCAaaa-GUGGUGGAGGAg-CGugGCG- -5' |
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13309 | 3' | -53.7 | NC_003409.1 | + | 30782 | 0.71 | 0.755911 |
Target: 5'- cGCGUUaUCuCCugCUCaUCGCgACCGCu -3' miRNA: 3'- -UGCAAaAGuGGugGAGgAGCG-UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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