miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13312 3' -50.6 NC_003409.1 + 126379 0.66 0.992845
Target:  5'- aGAUGGGAGA-UGUaGGCGgUUGGCg -3'
miRNA:   3'- aCUACUUUCUaACGgUCGCaGACCGg -5'
13312 3' -50.6 NC_003409.1 + 23973 0.66 0.989161
Target:  5'- gGcgGggGGGggGCUAGUgaGUCacgGGCCu -3'
miRNA:   3'- aCuaCuuUCUaaCGGUCG--CAGa--CCGG- -5'
13312 3' -50.6 NC_003409.1 + 61053 0.66 0.987649
Target:  5'- -uGUGGAAGAggGCaCAGCcUUUGcGCCa -3'
miRNA:   3'- acUACUUUCUaaCG-GUCGcAGAC-CGG- -5'
13312 3' -50.6 NC_003409.1 + 35229 0.66 0.985979
Target:  5'- gGGUGGAGuacuuGAggaGCCGGCGguaggUGGCCa -3'
miRNA:   3'- aCUACUUU-----CUaa-CGGUCGCag---ACCGG- -5'
13312 3' -50.6 NC_003409.1 + 111885 0.67 0.984142
Target:  5'- gGAUGAGAgGGUUGUgAGaauGUCUGacGCCg -3'
miRNA:   3'- aCUACUUU-CUAACGgUCg--CAGAC--CGG- -5'
13312 3' -50.6 NC_003409.1 + 49509 0.67 0.982128
Target:  5'- aUGGUGuuGGAca-CCAcCGUCUGGCUg -3'
miRNA:   3'- -ACUACuuUCUaacGGUcGCAGACCGG- -5'
13312 3' -50.6 NC_003409.1 + 124234 0.67 0.97753
Target:  5'- aGAUGGGccAGGUUGUgGGUcaucGUCUGGUg -3'
miRNA:   3'- aCUACUU--UCUAACGgUCG----CAGACCGg -5'
13312 3' -50.6 NC_003409.1 + 118984 0.67 0.97493
Target:  5'- cGAUGGGAGGggaGCUAGUgaGUCacGGCCc -3'
miRNA:   3'- aCUACUUUCUaa-CGGUCG--CAGa-CCGG- -5'
13312 3' -50.6 NC_003409.1 + 116404 0.68 0.958583
Target:  5'- -uGUGAGGGGUggGCCAG-GUCUaGGCg -3'
miRNA:   3'- acUACUUUCUAa-CGGUCgCAGA-CCGg -5'
13312 3' -50.6 NC_003409.1 + 87165 0.69 0.945867
Target:  5'- gGGUGGGuGGUgcGCCGGCGgagggCgUGGCCg -3'
miRNA:   3'- aCUACUUuCUAa-CGGUCGCa----G-ACCGG- -5'
13312 3' -50.6 NC_003409.1 + 90326 0.69 0.941115
Target:  5'- aUGAUGGugcuGGAcugccGCCGGCGUCcagacgccGGCCa -3'
miRNA:   3'- -ACUACUu---UCUaa---CGGUCGCAGa-------CCGG- -5'
13312 3' -50.6 NC_003409.1 + 51373 0.7 0.917678
Target:  5'- ---cGAAAGAUacguagguccucgcUGCCAcCGUUUGGCCc -3'
miRNA:   3'- acuaCUUUCUA--------------ACGGUcGCAGACCGG- -5'
13312 3' -50.6 NC_003409.1 + 98667 0.71 0.893619
Target:  5'- uUGAUGAcgAGGAcUGCCAcccuuacuGCGUCgcccaaGGCCu -3'
miRNA:   3'- -ACUACU--UUCUaACGGU--------CGCAGa-----CCGG- -5'
13312 3' -50.6 NC_003409.1 + 68270 0.71 0.886514
Target:  5'- aGAUccaGAGGGGUUGCUGGCGgcgaUGGCg -3'
miRNA:   3'- aCUA---CUUUCUAACGGUCGCag--ACCGg -5'
13312 3' -50.6 NC_003409.1 + 64540 1.13 0.004504
Target:  5'- cUGAUGAAAGAUUGCCAGCGUCUGGCCu -3'
miRNA:   3'- -ACUACUUUCUAACGGUCGCAGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.