miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13312 5' -51.2 NC_003409.1 + 45581 0.66 0.986669
Target:  5'- cAAAACUcUGGGCCGGGUcccGCUUugUg- -3'
miRNA:   3'- -UUUUGGuAUCCGGCCUA---UGAGugGuc -5'
13312 5' -51.2 NC_003409.1 + 101140 0.66 0.986669
Target:  5'- aAAGGCCugagugggggAGGCgGGAgccUUCACCAGa -3'
miRNA:   3'- -UUUUGGua--------UCCGgCCUau-GAGUGGUC- -5'
13312 5' -51.2 NC_003409.1 + 107057 0.66 0.986669
Target:  5'- --cACCAagaaGGGCCGGAUcCUUuuuuuCCAGg -3'
miRNA:   3'- uuuUGGUa---UCCGGCCUAuGAGu----GGUC- -5'
13312 5' -51.2 NC_003409.1 + 72754 0.66 0.984895
Target:  5'- gAGGACCAaaggcgcGGCCGGGUACaacgUGCCAu -3'
miRNA:   3'- -UUUUGGUau-----CCGGCCUAUGa---GUGGUc -5'
13312 5' -51.2 NC_003409.1 + 7571 0.66 0.982946
Target:  5'- -cGACCu--GGCCGGAUGCUUggGCgAa -3'
miRNA:   3'- uuUUGGuauCCGGCCUAUGAG--UGgUc -5'
13312 5' -51.2 NC_003409.1 + 108759 0.66 0.980814
Target:  5'- -uGGCCAacaggAGGCCGGccUGCUCcgcuuccuguACCAGg -3'
miRNA:   3'- uuUUGGUa----UCCGGCCu-AUGAG----------UGGUC- -5'
13312 5' -51.2 NC_003409.1 + 51804 0.66 0.978488
Target:  5'- aGGAACUgcagAGGCUGGcgcGUGCUaCGCCGGa -3'
miRNA:   3'- -UUUUGGua--UCCGGCC---UAUGA-GUGGUC- -5'
13312 5' -51.2 NC_003409.1 + 65015 0.67 0.970264
Target:  5'- uGAACCcgGGGCUGG--GCUCGuCCAu -3'
miRNA:   3'- uUUUGGuaUCCGGCCuaUGAGU-GGUc -5'
13312 5' -51.2 NC_003409.1 + 32426 0.67 0.967079
Target:  5'- uGAGCCcgGGGCUuaGGAgGCUCAUguGg -3'
miRNA:   3'- uUUUGGuaUCCGG--CCUaUGAGUGguC- -5'
13312 5' -51.2 NC_003409.1 + 56614 0.67 0.963661
Target:  5'- --cGCCAuUAGGCCGGugaACUcCGCCGc -3'
miRNA:   3'- uuuUGGU-AUCCGGCCua-UGA-GUGGUc -5'
13312 5' -51.2 NC_003409.1 + 68689 0.67 0.963661
Target:  5'- aGAGGCCAgcGGagaUGGAUGCUgggccguaagCACCAGg -3'
miRNA:   3'- -UUUUGGUauCCg--GCCUAUGA----------GUGGUC- -5'
13312 5' -51.2 NC_003409.1 + 110440 0.68 0.947528
Target:  5'- --cGCCAgaagAGGCgGGAUcACaguUCGCCAGa -3'
miRNA:   3'- uuuUGGUa---UCCGgCCUA-UG---AGUGGUC- -5'
13312 5' -51.2 NC_003409.1 + 105151 0.68 0.947528
Target:  5'- cGGGGCCcgGGGUuuccguaaCGGAUGuCUCACCAu -3'
miRNA:   3'- -UUUUGGuaUCCG--------GCCUAU-GAGUGGUc -5'
13312 5' -51.2 NC_003409.1 + 49165 0.71 0.858274
Target:  5'- uGGGACCGcAGGCCGGGUcACaugCACCGc -3'
miRNA:   3'- -UUUUGGUaUCCGGCCUA-UGa--GUGGUc -5'
13312 5' -51.2 NC_003409.1 + 85151 0.74 0.70516
Target:  5'- uGAACCAUccAGGUCGGAg--UCACCGGg -3'
miRNA:   3'- uUUUGGUA--UCCGGCCUaugAGUGGUC- -5'
13312 5' -51.2 NC_003409.1 + 64505 1.06 0.009841
Target:  5'- aAAAACCAUAGGCCGGAUACUCACCAGc -3'
miRNA:   3'- -UUUUGGUAUCCGGCCUAUGAGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.