Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13313 | 3' | -57.5 | NC_003409.1 | + | 23318 | 0.67 | 0.788701 |
Target: 5'- uCUg--CCCCGCUCCcauUGGUCCgCCGg -3' miRNA: 3'- cGAaaaGGGGCGAGGac-GUCAGG-GGC- -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 124379 | 0.67 | 0.779535 |
Target: 5'- ----gUCuCCUGCUCCUGCuGUUCCa- -3' miRNA: 3'- cgaaaAG-GGGCGAGGACGuCAGGGgc -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 74353 | 0.68 | 0.751286 |
Target: 5'- aGCUggacacgCCaCCGCcUCUGCGGUCaCCCu -3' miRNA: 3'- -CGAaaa----GG-GGCGaGGACGUCAG-GGGc -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 32944 | 0.71 | 0.540569 |
Target: 5'- aGCUUUUCaUuuGCUaCCUGaUAGUCUCCGg -3' miRNA: 3'- -CGAAAAG-GggCGA-GGAC-GUCAGGGGC- -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 65204 | 1.1 | 0.001659 |
Target: 5'- uGCUUUUCCCCGCUCCUGCAGUCCCCGu -3' miRNA: 3'- -CGAAAAGGGGCGAGGACGUCAGGGGC- -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 118662 | 0.74 | 0.376503 |
Target: 5'- -----aCCCUGCgaacCCUGCAGUaCCCCGg -3' miRNA: 3'- cgaaaaGGGGCGa---GGACGUCA-GGGGC- -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 61103 | 0.72 | 0.473068 |
Target: 5'- gGCUg--CCCCGUUCCacuUGCuGUCCUCa -3' miRNA: 3'- -CGAaaaGGGGCGAGG---ACGuCAGGGGc -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 66608 | 0.68 | 0.74165 |
Target: 5'- uCUgugUCCCC-CUCCUGCcccagaacGUCCUCGg -3' miRNA: 3'- cGAaa-AGGGGcGAGGACGu-------CAGGGGC- -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 26264 | 0.67 | 0.779535 |
Target: 5'- ----aUCCuaaCUGCUCCUGCGGgaacauucucCCCCGg -3' miRNA: 3'- cgaaaAGG---GGCGAGGACGUCa---------GGGGC- -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 119691 | 0.67 | 0.788702 |
Target: 5'- uCUg--CCCCGCUCCcauUGGUCCgCCGg -3' miRNA: 3'- cGAaaaGGGGCGAGGac-GUCAGG-GGC- -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 129935 | 0.67 | 0.797728 |
Target: 5'- -----aCCCUGCUCCUGUgucgacAGgcaucCCCCGa -3' miRNA: 3'- cgaaaaGGGGCGAGGACG------UCa----GGGGC- -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 124068 | 0.67 | 0.797728 |
Target: 5'- gGCagg-CCCCGUgUCCUGCuugCCCCa -3' miRNA: 3'- -CGaaaaGGGGCG-AGGACGucaGGGGc -5' |
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13313 | 3' | -57.5 | NC_003409.1 | + | 12835 | 0.66 | 0.843701 |
Target: 5'- aGCUUUUCCCUGCaaaCCUgGUAcaugucuauggggacGaUCCCCGa -3' miRNA: 3'- -CGAAAAGGGGCGa--GGA-CGU---------------C-AGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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