miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13313 5' -52.8 NC_003409.1 + 128806 0.66 0.965473
Target:  5'- gGCCGcGGGAaGGUcauGGGccAAGGGGCCUUg -3'
miRNA:   3'- -CGGC-UUUUgCCG---UCU--UUCCCCGGAAg -5'
13313 5' -52.8 NC_003409.1 + 132780 0.66 0.962018
Target:  5'- cCCGAGGAUGuu-GAcuGGGGCCUUUu -3'
miRNA:   3'- cGGCUUUUGCcguCUuuCCCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 33741 0.66 0.961659
Target:  5'- aCCGGAuccaAACGcccccauGCuGAAAGGGGCCa-- -3'
miRNA:   3'- cGGCUU----UUGC-------CGuCUUUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 20795 0.67 0.950232
Target:  5'- gGCCGGGcGCGGCcuggcgcacagaAGGGAGGGGgaUUUg -3'
miRNA:   3'- -CGGCUUuUGCCG------------UCUUUCCCCggAAG- -5'
13313 5' -52.8 NC_003409.1 + 84544 0.67 0.945816
Target:  5'- uGCCaucuuguacGACGGCAGAGggucAGGaGGCCgUCa -3'
miRNA:   3'- -CGGcuu------UUGCCGUCUU----UCC-CCGGaAG- -5'
13313 5' -52.8 NC_003409.1 + 133650 0.67 0.945816
Target:  5'- cCUGuuuccAGGCGGaCAGAcacAGGGGGCCcUCa -3'
miRNA:   3'- cGGCu----UUUGCC-GUCU---UUCCCCGGaAG- -5'
13313 5' -52.8 NC_003409.1 + 107697 0.67 0.941149
Target:  5'- cGCUGGAcccACGGCcgccGGAAGGGGCg--- -3'
miRNA:   3'- -CGGCUUu--UGCCGu---CUUUCCCCGgaag -5'
13313 5' -52.8 NC_003409.1 + 94331 0.68 0.925629
Target:  5'- cCCGAcAAcCGGCuGggGGGGGCg--- -3'
miRNA:   3'- cGGCUuUU-GCCGuCuuUCCCCGgaag -5'
13313 5' -52.8 NC_003409.1 + 47900 0.68 0.919945
Target:  5'- uGCCGAGuaggcauacACGuGCAGucuGGGGCCa-- -3'
miRNA:   3'- -CGGCUUu--------UGC-CGUCuuuCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 116758 0.71 0.81519
Target:  5'- gGCCGGGugcGACGGUAGAcaggucuAGGGGCag-Ca -3'
miRNA:   3'- -CGGCUU---UUGCCGUCUu------UCCCCGgaaG- -5'
13313 5' -52.8 NC_003409.1 + 113219 0.71 0.796907
Target:  5'- aCCGAAGACGGUaacgggcucgGGAuAGGGGCg--- -3'
miRNA:   3'- cGGCUUUUGCCG----------UCUuUCCCCGgaag -5'
13313 5' -52.8 NC_003409.1 + 25946 0.72 0.718208
Target:  5'- uCCGGAGACGaGcCGGAcGGGGGCCc-- -3'
miRNA:   3'- cGGCUUUUGC-C-GUCUuUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 65167 1.13 0.002853
Target:  5'- uGCCGAAAACGGCAGAAAGGGGCCUUCg -3'
miRNA:   3'- -CGGCUUUUGCCGUCUUUCCCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 34905 0.66 0.971418
Target:  5'- aCCGAAGAUggacagaGGCGGGAAGauucuGGGCCc-- -3'
miRNA:   3'- cGGCUUUUG-------CCGUCUUUC-----CCCGGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.