miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13314 5' -58.6 NC_003409.1 + 118531 0.66 0.79032
Target:  5'- gGGUacuaccuGGUUUCCUGGGGUgugccaggacggguUCCUGGGGu -3'
miRNA:   3'- gCCG-------UCAAGGGACUCCA--------------GGGACUCCu -5'
13314 5' -58.6 NC_003409.1 + 107199 0.66 0.775722
Target:  5'- aCGGCAGUggCCCacuUGuccgcgcccuGGUCCCUGAcuaauuuuuGGAu -3'
miRNA:   3'- -GCCGUCAa-GGG---ACu---------CCAGGGACU---------CCU- -5'
13314 5' -58.6 NC_003409.1 + 109691 0.67 0.737897
Target:  5'- cCGGCAGUggUCCagCUGAGGcUUCCagcgUGAGGu -3'
miRNA:   3'- -GCCGUCA--AGG--GACUCC-AGGG----ACUCCu -5'
13314 5' -58.6 NC_003409.1 + 100829 0.68 0.64838
Target:  5'- ---aGGUUCCCaGAGGcUCCUGGGGAc -3'
miRNA:   3'- gccgUCAAGGGaCUCCaGGGACUCCU- -5'
13314 5' -58.6 NC_003409.1 + 118104 0.7 0.528198
Target:  5'- gGGCaccaGGUUCCCgggGAGGagggcaccagguUCCCgggGAGGAg -3'
miRNA:   3'- gCCG----UCAAGGGa--CUCC------------AGGGa--CUCCU- -5'
13314 5' -58.6 NC_003409.1 + 118242 0.7 0.528198
Target:  5'- gGGCaccaGGUUCCCgggGAGGagggcaccagguUCCCgggGAGGAg -3'
miRNA:   3'- gCCG----UCAAGGGa--CUCC------------AGGGa--CUCCU- -5'
13314 5' -58.6 NC_003409.1 + 118196 0.7 0.528198
Target:  5'- gGGCaccaGGUUCCCgggGAGGagggcaccagguUCCCgggGAGGAg -3'
miRNA:   3'- gCCG----UCAAGGGa--CUCC------------AGGGa--CUCCU- -5'
13314 5' -58.6 NC_003409.1 + 118150 0.7 0.528198
Target:  5'- gGGCaccaGGUUCCCgggGAGGagggcaccagguUCCCgggGAGGAg -3'
miRNA:   3'- gCCG----UCAAGGGa--CUCC------------AGGGa--CUCCU- -5'
13314 5' -58.6 NC_003409.1 + 118058 0.7 0.528198
Target:  5'- gGGCaccaGGUUCCCgggGAGGagggcaccagguUCCCgggGAGGAg -3'
miRNA:   3'- gCCG----UCAAGGGa--CUCC------------AGGGa--CUCCU- -5'
13314 5' -58.6 NC_003409.1 + 118012 0.7 0.528198
Target:  5'- gGGCaccaGGUUCCCgggGAGGagggcaccagguUCCCgggGAGGAg -3'
miRNA:   3'- gCCG----UCAAGGGa--CUCC------------AGGGa--CUCCU- -5'
13314 5' -58.6 NC_003409.1 + 34370 0.72 0.420661
Target:  5'- cCGcGCAGgUCCCUGucaacggagaagugaGGGUCCCcGGGGAc -3'
miRNA:   3'- -GC-CGUCaAGGGAC---------------UCCAGGGaCUCCU- -5'
13314 5' -58.6 NC_003409.1 + 66544 1.09 0.001492
Target:  5'- cCGGCAGUUCCCUGAGGUCCCUGAGGAa -3'
miRNA:   3'- -GCCGUCAAGGGACUCCAGGGACUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.