miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13315 5' -53.3 NC_003409.1 + 82157 0.66 0.960096
Target:  5'- uCAUAAuGUCCAUGUCuaucauugCUUGUACCAu -3'
miRNA:   3'- -GUGUUuCAGGUGCGGua------GAGCGUGGU- -5'
13315 5' -53.3 NC_003409.1 + 34931 0.66 0.956291
Target:  5'- gGCGugauAGUCCACGCC-UCg-GUACCc -3'
miRNA:   3'- gUGUu---UCAGGUGCGGuAGagCGUGGu -5'
13315 5' -53.3 NC_003409.1 + 107510 0.66 0.956291
Target:  5'- aGCGGAGUaCCaACGCCGUggUUCGCcCCu -3'
miRNA:   3'- gUGUUUCA-GG-UGCGGUA--GAGCGuGGu -5'
13315 5' -53.3 NC_003409.1 + 50965 0.66 0.956291
Target:  5'- aCAUAAGGgacucgCCACacucuUCAUUUCGCACCGg -3'
miRNA:   3'- -GUGUUUCa-----GGUGc----GGUAGAGCGUGGU- -5'
13315 5' -53.3 NC_003409.1 + 53161 0.66 0.952245
Target:  5'- -cCAAAGUagaugaGCGCCAUaccaUCGCGCCc -3'
miRNA:   3'- guGUUUCAgg----UGCGGUAg---AGCGUGGu -5'
13315 5' -53.3 NC_003409.1 + 108239 0.67 0.938633
Target:  5'- -uCGAAGUCCgcccgcuguaGCGCCAgaaguuuggccUCUUGCugCAg -3'
miRNA:   3'- guGUUUCAGG----------UGCGGU-----------AGAGCGugGU- -5'
13315 5' -53.3 NC_003409.1 + 37798 0.67 0.922754
Target:  5'- cCAUAGAGcgCUACGCCGgaCUCGUuguuGCCAa -3'
miRNA:   3'- -GUGUUUCa-GGUGCGGUa-GAGCG----UGGU- -5'
13315 5' -53.3 NC_003409.1 + 118911 0.68 0.910899
Target:  5'- uGCuAGGUCCACGCuCAccUCUgGCGCg- -3'
miRNA:   3'- gUGuUUCAGGUGCG-GU--AGAgCGUGgu -5'
13315 5' -53.3 NC_003409.1 + 121407 0.68 0.904593
Target:  5'- aCACGGAuGUCUACGCC-UCUCaaACCu -3'
miRNA:   3'- -GUGUUU-CAGGUGCGGuAGAGcgUGGu -5'
13315 5' -53.3 NC_003409.1 + 53494 0.68 0.903949
Target:  5'- cCACGGAGUCCAUGgCAguggacacagUCuggguggUCGCACCu -3'
miRNA:   3'- -GUGUUUCAGGUGCgGU----------AG-------AGCGUGGu -5'
13315 5' -53.3 NC_003409.1 + 84161 0.68 0.891239
Target:  5'- uCGCAuAGcucccgCUugGCUAUCUCGCagGCCAg -3'
miRNA:   3'- -GUGUuUCa-----GGugCGGUAGAGCG--UGGU- -5'
13315 5' -53.3 NC_003409.1 + 107030 0.69 0.869407
Target:  5'- cCAgGgcGUCCAgGgCAUCUCGCAgCAg -3'
miRNA:   3'- -GUgUuuCAGGUgCgGUAGAGCGUgGU- -5'
13315 5' -53.3 NC_003409.1 + 98262 0.69 0.869407
Target:  5'- uGCGAGGUCC-CaGCCGUCg-GCAUCAc -3'
miRNA:   3'- gUGUUUCAGGuG-CGGUAGagCGUGGU- -5'
13315 5' -53.3 NC_003409.1 + 115706 0.69 0.837163
Target:  5'- uCACAGGGUCCAUGUC-UgaUGCACCc -3'
miRNA:   3'- -GUGUUUCAGGUGCGGuAgaGCGUGGu -5'
13315 5' -53.3 NC_003409.1 + 99223 0.7 0.819822
Target:  5'- -cCAGAGuUCCAUGUaugcgCUCGCGCCAa -3'
miRNA:   3'- guGUUUC-AGGUGCGgua--GAGCGUGGU- -5'
13315 5' -53.3 NC_003409.1 + 61800 0.7 0.810875
Target:  5'- uCACAAAcccGUCaacUGCCAaCUCGCACCAc -3'
miRNA:   3'- -GUGUUU---CAGgu-GCGGUaGAGCGUGGU- -5'
13315 5' -53.3 NC_003409.1 + 87350 0.72 0.733896
Target:  5'- aCGCAGGGUggcgcgucggCCACGCCcUCcgccggCGCACCAc -3'
miRNA:   3'- -GUGUUUCA----------GGUGCGGuAGa-----GCGUGGU- -5'
13315 5' -53.3 NC_003409.1 + 128927 0.72 0.713511
Target:  5'- aUAgGGGGUCCAUGUCAUCUgaaguaggugaUGCACCGc -3'
miRNA:   3'- -GUgUUUCAGGUGCGGUAGA-----------GCGUGGU- -5'
13315 5' -53.3 NC_003409.1 + 66810 1.09 0.004511
Target:  5'- aCACAAAGUCCACGCCAUCUCGCACCAc -3'
miRNA:   3'- -GUGUUUCAGGUGCGGUAGAGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.