Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13316 | 3' | -56.1 | NC_003409.1 | + | 110612 | 0.66 | 0.889384 |
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Target: 5'- aGgAGUCUGgcgaacugugaucCCGCCUCUUCUGGcgaugucgguaGGCGc -3' miRNA: 3'- -CgUCAGAU-------------GGCGGAGGAGACCa----------UCGC- -5' |
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| 13316 | 3' | -56.1 | NC_003409.1 | + | 3246 | 0.67 | 0.853346 |
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Target: 5'- -gGGUCUGCgGCCcCCaCUGGUcccuGCGg -3' miRNA: 3'- cgUCAGAUGgCGGaGGaGACCAu---CGC- -5' |
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| 13316 | 3' | -56.1 | NC_003409.1 | + | 106593 | 0.68 | 0.802707 |
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Target: 5'- aGUGGcUCUACCGCCUCUgCaGGgcGUGa -3' miRNA: 3'- -CGUC-AGAUGGCGGAGGaGaCCauCGC- -5' |
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| 13316 | 3' | -56.1 | NC_003409.1 | + | 32877 | 0.68 | 0.775171 |
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Target: 5'- gGCGGgCUACUGCCUCgccUUUUGGggcAGCGa -3' miRNA: 3'- -CGUCaGAUGGCGGAG---GAGACCa--UCGC- -5' |
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| 13316 | 3' | -56.1 | NC_003409.1 | + | 67668 | 0.72 | 0.573837 |
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Target: 5'- -uGGUCUucuCCGuCCUCCUCggacgagGGUGGCu -3' miRNA: 3'- cgUCAGAu--GGC-GGAGGAGa------CCAUCGc -5' |
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| 13316 | 3' | -56.1 | NC_003409.1 | + | 97965 | 0.72 | 0.564703 |
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Target: 5'- -gGGUC-ACCGCCUCaCUCUGGgaugaaacaagauggGGCGu -3' miRNA: 3'- cgUCAGaUGGCGGAG-GAGACCa--------------UCGC- -5' |
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| 13316 | 3' | -56.1 | NC_003409.1 | + | 7655 | 0.74 | 0.447278 |
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Target: 5'- aGCAGUCU-CUGUCUCCgUCgcaGGUGGCa -3' miRNA: 3'- -CGUCAGAuGGCGGAGG-AGa--CCAUCGc -5' |
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| 13316 | 3' | -56.1 | NC_003409.1 | + | 67747 | 1.11 | 0.001862 |
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Target: 5'- gGCAGUCUACCGCCUCCUCUGGUAGCGa -3' miRNA: 3'- -CGUCAGAUGGCGGAGGAGACCAUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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