miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13316 5' -51.2 NC_003409.1 + 51540 0.66 0.98363
Target:  5'- gUGUcCUGCCAGGGGaggaaAACC-AACUUGc -3'
miRNA:   3'- -ACGcGACGGUCUCUg----UUGGuUUGAAU- -5'
13316 5' -51.2 NC_003409.1 + 113801 0.66 0.98363
Target:  5'- cUGUGCgGCCgaauccgccacGGGGGCuGCCAGACa-- -3'
miRNA:   3'- -ACGCGaCGG-----------UCUCUGuUGGUUUGaau -5'
13316 5' -51.2 NC_003409.1 + 131698 0.66 0.981544
Target:  5'- cGgGCgGCCAGGGACuACC--GCUg- -3'
miRNA:   3'- aCgCGaCGGUCUCUGuUGGuuUGAau -5'
13316 5' -51.2 NC_003409.1 + 130929 0.66 0.979264
Target:  5'- aGUGUUGCgGGGGACGgugcuGCCcAGCUg- -3'
miRNA:   3'- aCGCGACGgUCUCUGU-----UGGuUUGAau -5'
13316 5' -51.2 NC_003409.1 + 73110 0.67 0.96803
Target:  5'- gGCGCcGCUGGAGAUcauGACCAAGg--- -3'
miRNA:   3'- aCGCGaCGGUCUCUG---UUGGUUUgaau -5'
13316 5' -51.2 NC_003409.1 + 59083 0.67 0.964652
Target:  5'- gGCGCcgacgucGCCAGAGGCAuguauGCCGcACUc- -3'
miRNA:   3'- aCGCGa------CGGUCUCUGU-----UGGUuUGAau -5'
13316 5' -51.2 NC_003409.1 + 10141 0.67 0.964652
Target:  5'- cGCGagcagGUCAGGGACAACCuAAugUg- -3'
miRNA:   3'- aCGCga---CGGUCUCUGUUGG-UUugAau -5'
13316 5' -51.2 NC_003409.1 + 5182 0.67 0.953038
Target:  5'- gGCGcCUGCCAGuauacguuGCAugCAAACUg- -3'
miRNA:   3'- aCGC-GACGGUCuc------UGUugGUUUGAau -5'
13316 5' -51.2 NC_003409.1 + 84343 0.68 0.939096
Target:  5'- aUGUGCcaaaccugGCCugcGAGAUAGCCAAGCg-- -3'
miRNA:   3'- -ACGCGa-------CGGu--CUCUGUUGGUUUGaau -5'
13316 5' -51.2 NC_003409.1 + 66924 0.68 0.933915
Target:  5'- gGCGCUGuCCuccuGGACGGCCGAAUc-- -3'
miRNA:   3'- aCGCGAC-GGuc--UCUGUUGGUUUGaau -5'
13316 5' -51.2 NC_003409.1 + 27900 0.68 0.928464
Target:  5'- gUGCGCuUGCgCGGAGACAACauaccGACg-- -3'
miRNA:   3'- -ACGCG-ACG-GUCUCUGUUGgu---UUGaau -5'
13316 5' -51.2 NC_003409.1 + 110092 0.69 0.920972
Target:  5'- aGCGCcGCCAGAGcguuccugcgccugGCcGACCAGGCg-- -3'
miRNA:   3'- aCGCGaCGGUCUC--------------UG-UUGGUUUGaau -5'
13316 5' -51.2 NC_003409.1 + 103184 0.69 0.910487
Target:  5'- gUGCGCgUGCCAGuuGCAccGCCAGAa--- -3'
miRNA:   3'- -ACGCG-ACGGUCucUGU--UGGUUUgaau -5'
13316 5' -51.2 NC_003409.1 + 60146 0.69 0.910487
Target:  5'- gGCGCUGCgGcGGGAgAGCCAAuCUg- -3'
miRNA:   3'- aCGCGACGgU-CUCUgUUGGUUuGAau -5'
13316 5' -51.2 NC_003409.1 + 10020 0.7 0.89296
Target:  5'- cGCuGCUGCCGGcggcgggggguccacGGACAACCuguCUUAc -3'
miRNA:   3'- aCG-CGACGGUC---------------UCUGUUGGuuuGAAU- -5'
13316 5' -51.2 NC_003409.1 + 37971 0.7 0.882793
Target:  5'- cUGCGCaGCUcaAGAGGCGgcGCCGGACa-- -3'
miRNA:   3'- -ACGCGaCGG--UCUCUGU--UGGUUUGaau -5'
13316 5' -51.2 NC_003409.1 + 102825 0.71 0.842575
Target:  5'- -uUGCUGCCgAGGcGGCAACCGGGCUc- -3'
miRNA:   3'- acGCGACGG-UCU-CUGUUGGUUUGAau -5'
13316 5' -51.2 NC_003409.1 + 78956 0.73 0.757394
Target:  5'- cGCGCcaGCCGGAGGCAACUuuACc-- -3'
miRNA:   3'- aCGCGa-CGGUCUCUGUUGGuuUGaau -5'
13316 5' -51.2 NC_003409.1 + 121956 0.74 0.705188
Target:  5'- gGUGCUGCCcaGGACGGCCGGAUg-- -3'
miRNA:   3'- aCGCGACGGucUCUGUUGGUUUGaau -5'
13316 5' -51.2 NC_003409.1 + 33980 0.77 0.511689
Target:  5'- gGCGC-GCCAGGGACAgcgcccGCCAugGACUUGg -3'
miRNA:   3'- aCGCGaCGGUCUCUGU------UGGU--UUGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.