miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13317 5' -61.2 NC_003409.1 + 54811 0.66 0.695153
Target:  5'- aCCUACUggucaccuccgGGUCACCCUCGgacaCGAGcGAg -3'
miRNA:   3'- aGGGUGG-----------UCGGUGGGAGCag--GCUC-CU- -5'
13317 5' -61.2 NC_003409.1 + 44001 0.66 0.695153
Target:  5'- aUCC-CCGGCCAUCCagUCGaCCGAGa- -3'
miRNA:   3'- aGGGuGGUCGGUGGG--AGCaGGCUCcu -5'
13317 5' -61.2 NC_003409.1 + 34593 0.66 0.68929
Target:  5'- aUCCCccccgcagGCCAGCCACCguaacuucaccguggCgaUCGUccCCGGGGAc -3'
miRNA:   3'- -AGGG--------UGGUCGGUGG---------------G--AGCA--GGCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 8007 0.66 0.636008
Target:  5'- aCCUACCAGCUGCCUaCGggCCucGGAu -3'
miRNA:   3'- aGGGUGGUCGGUGGGaGCa-GGcuCCU- -5'
13317 5' -61.2 NC_003409.1 + 113320 0.67 0.616189
Target:  5'- cCCCACCGucGCUACCCUgG-CUaAGGAa -3'
miRNA:   3'- aGGGUGGU--CGGUGGGAgCaGGcUCCU- -5'
13317 5' -61.2 NC_003409.1 + 5445 0.67 0.595429
Target:  5'- gCCgGCCAGCCAaagggauUCauacaUCGUCgGAGGAc -3'
miRNA:   3'- aGGgUGGUCGGU-------GGg----AGCAGgCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24372 0.67 0.586563
Target:  5'- gUCCCACguGCCGCCgCgcgCGcagugCgCGAGGGg -3'
miRNA:   3'- -AGGGUGguCGGUGG-Ga--GCa----G-GCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 43811 0.68 0.566955
Target:  5'- aCCCGCaucGCCGCCucuCUCGUCaagauaGGGGAu -3'
miRNA:   3'- aGGGUGgu-CGGUGG---GAGCAGg-----CUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24586 0.69 0.481442
Target:  5'- cCCCGgCGcGCCACCCUCccCgGAGGGg -3'
miRNA:   3'- aGGGUgGU-CGGUGGGAGcaGgCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 35565 0.7 0.454314
Target:  5'- gUCCCACCuGCCucCCCUaGUCacaGAGGc -3'
miRNA:   3'- -AGGGUGGuCGGu-GGGAgCAGg--CUCCu -5'
13317 5' -61.2 NC_003409.1 + 55044 0.7 0.436696
Target:  5'- uUCCuCACCcGCCGCCC-CGaaacccugcCCGAGGAc -3'
miRNA:   3'- -AGG-GUGGuCGGUGGGaGCa--------GGCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 75702 0.7 0.417779
Target:  5'- cUCCCACCauguugaAGCUugguuguGCCgUCGUCCGGGaGAa -3'
miRNA:   3'- -AGGGUGG-------UCGG-------UGGgAGCAGGCUC-CU- -5'
13317 5' -61.2 NC_003409.1 + 19000 0.71 0.377497
Target:  5'- cCCCGCgGGCCcCuCCUCGUCCugguuauccccacGGGGAa -3'
miRNA:   3'- aGGGUGgUCGGuG-GGAGCAGG-------------CUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24645 0.71 0.370388
Target:  5'- aUCCCGgCGcGCCACCCUCccCgGAGGGg -3'
miRNA:   3'- -AGGGUgGU-CGGUGGGAGcaGgCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24675 0.71 0.370388
Target:  5'- aUCCCGgCGcGCCACCCUCccCgGAGGGg -3'
miRNA:   3'- -AGGGUgGU-CGGUGGGAGcaGgCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24705 0.71 0.370388
Target:  5'- aUCCCGgCGcGCCACCCUCccCgGAGGGg -3'
miRNA:   3'- -AGGGUgGU-CGGUGGGAGcaGgCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24615 0.71 0.370388
Target:  5'- aUCCCGgCGcGCCACCCUCccCgGAGGGg -3'
miRNA:   3'- -AGGGUgGU-CGGUGGGAGcaGgCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24765 0.71 0.370388
Target:  5'- aUCCCGgCGcGCCACCCUCccCgGAGGGg -3'
miRNA:   3'- -AGGGUgGU-CGGUGGGAGcaGgCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24795 0.71 0.370388
Target:  5'- aUCCCGgCGcGCCACCCUCccCgGAGGGg -3'
miRNA:   3'- -AGGGUgGU-CGGUGGGAGcaGgCUCCU- -5'
13317 5' -61.2 NC_003409.1 + 24825 0.71 0.370388
Target:  5'- aUCCCGgCGcGCCACCCUCccCgGAGGGg -3'
miRNA:   3'- -AGGGUgGU-CGGUGGGAGcaGgCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.