Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13318 | 3' | -46.2 | NC_003409.1 | + | 64082 | 0.7 | 0.991861 |
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Target: 5'- gGAGCugGCAAAGUUUugCGUGCucugccguccGGUGACa -3' miRNA: 3'- -CUUG--UGUUUCAAGugGUAUG----------UCGCUG- -5' |
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| 13318 | 3' | -46.2 | NC_003409.1 | + | 134857 | 0.7 | 0.991861 |
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Target: 5'- cGAACGCAcAG-UCACCuAUGCuaguaucuugGGCGACa -3' miRNA: 3'- -CUUGUGUuUCaAGUGG-UAUG----------UCGCUG- -5' |
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| 13318 | 3' | -46.2 | NC_003409.1 | + | 22789 | 0.74 | 0.948233 |
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Target: 5'- uGACACAGGGgaaaCACCAgggGCGGCGGa -3' miRNA: 3'- cUUGUGUUUCaa--GUGGUa--UGUCGCUg -5' |
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| 13318 | 3' | -46.2 | NC_003409.1 | + | 56453 | 0.74 | 0.938375 |
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Target: 5'- ---gGCGGAGUUCACCGgccuaAUGGCGGCg -3' miRNA: 3'- cuugUGUUUCAAGUGGUa----UGUCGCUG- -5' |
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| 13318 | 3' | -46.2 | NC_003409.1 | + | 39607 | 0.75 | 0.915267 |
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Target: 5'- --uCGCAGGGgcaaguucugCGCCGUACAGCGAUg -3' miRNA: 3'- cuuGUGUUUCaa--------GUGGUAUGUCGCUG- -5' |
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| 13318 | 3' | -46.2 | NC_003409.1 | + | 34435 | 0.75 | 0.908781 |
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Target: 5'- --uCACGGAcaaCGCCAUGCAGCGGCg -3' miRNA: 3'- cuuGUGUUUcaaGUGGUAUGUCGCUG- -5' |
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| 13318 | 3' | -46.2 | NC_003409.1 | + | 4381 | 0.77 | 0.855773 |
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Target: 5'- aGAGCACAGAGUUgGCCGcaaACAGCugGGCg -3' miRNA: 3'- -CUUGUGUUUCAAgUGGUa--UGUCG--CUG- -5' |
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| 13318 | 3' | -46.2 | NC_003409.1 | + | 68012 | 1.1 | 0.019063 |
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Target: 5'- gGAACACAAAGUUCACCAUACAGCGACc -3' miRNA: 3'- -CUUGUGUUUCAAGUGGUAUGUCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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