miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1332 5' -55.7 NC_001335.1 + 24794 0.66 0.673157
Target:  5'- gACGaugUCCAGCUCcucaGGCGUCAGCGc-- -3'
miRNA:   3'- aUGCa--GGGUCGAG----CUGUAGUCGCuca -5'
1332 5' -55.7 NC_001335.1 + 17572 0.66 0.662082
Target:  5'- -uCGUCCagGGCcugaucaaCGGCAUCGGCGGGa -3'
miRNA:   3'- auGCAGGg-UCGa-------GCUGUAGUCGCUCa -5'
1332 5' -55.7 NC_001335.1 + 42368 0.66 0.648755
Target:  5'- gGCGUCCaaGGCUCGcugcaucugguuCAUCAGcCGGGUg -3'
miRNA:   3'- aUGCAGGg-UCGAGCu-----------GUAGUC-GCUCA- -5'
1332 5' -55.7 NC_001335.1 + 34175 0.67 0.606489
Target:  5'- -uCGUCCCAGUgcaucaUCGACAUCcGCGc-- -3'
miRNA:   3'- auGCAGGGUCG------AGCUGUAGuCGCuca -5'
1332 5' -55.7 NC_001335.1 + 14433 0.67 0.562355
Target:  5'- cACGcUCCCugAGUUCGGCuucgaaggCGGCGAGUc -3'
miRNA:   3'- aUGC-AGGG--UCGAGCUGua------GUCGCUCA- -5'
1332 5' -55.7 NC_001335.1 + 45532 0.68 0.519133
Target:  5'- cACGUCCUcguaCUCGACGgUCAGCGAc- -3'
miRNA:   3'- aUGCAGGGuc--GAGCUGU-AGUCGCUca -5'
1332 5' -55.7 NC_001335.1 + 21747 0.68 0.508526
Target:  5'- aGCGUCaaGGCa-GACAUCAGCGAc- -3'
miRNA:   3'- aUGCAGggUCGagCUGUAGUCGCUca -5'
1332 5' -55.7 NC_001335.1 + 22199 0.69 0.46708
Target:  5'- aGCGUcugcugaacaaCCCGGC-CGAgguCAUCGGCGAGa -3'
miRNA:   3'- aUGCA-----------GGGUCGaGCU---GUAGUCGCUCa -5'
1332 5' -55.7 NC_001335.1 + 5459 0.81 0.084318
Target:  5'- -uUGUCCC-GCUCGAUGUCGGCGAGg -3'
miRNA:   3'- auGCAGGGuCGAGCUGUAGUCGCUCa -5'
1332 5' -55.7 NC_001335.1 + 1865 1.05 0.001395
Target:  5'- aUACGUCCCAGCUCGACAUCAGCGAGUc -3'
miRNA:   3'- -AUGCAGGGUCGAGCUGUAGUCGCUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.