miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13321 5' -56.3 NC_003409.1 + 132584 0.66 0.855395
Target:  5'- uGCUGGCCGaGAGGgUGGCgcccagagUGCCCGAc -3'
miRNA:   3'- gCGGUCGGC-CUCC-GUUGaa------AUGGGUU- -5'
13321 5' -56.3 NC_003409.1 + 7997 0.66 0.8546
Target:  5'- uGCCuacgGGCCucGGAuuGGCAACUuucaguggaacauUUGCCCAAa -3'
miRNA:   3'- gCGG----UCGG--CCU--CCGUUGA-------------AAUGGGUU- -5'
13321 5' -56.3 NC_003409.1 + 110832 0.67 0.813183
Target:  5'- uGCCAGCacCGcAGGUAACggaGCCCAAa -3'
miRNA:   3'- gCGGUCG--GCcUCCGUUGaaaUGGGUU- -5'
13321 5' -56.3 NC_003409.1 + 12000 0.67 0.813183
Target:  5'- gGCCuGCUGGAGGacguggguCAGgUUUACCCc- -3'
miRNA:   3'- gCGGuCGGCCUCC--------GUUgAAAUGGGuu -5'
13321 5' -56.3 NC_003409.1 + 14347 0.67 0.804193
Target:  5'- uGCCAGCuCGGAGcGCAgGCU--ACCUGGg -3'
miRNA:   3'- gCGGUCG-GCCUC-CGU-UGAaaUGGGUU- -5'
13321 5' -56.3 NC_003409.1 + 48298 0.67 0.804193
Target:  5'- aCGCgAGCCGGAcGGCAG----GCCUAc -3'
miRNA:   3'- -GCGgUCGGCCU-CCGUUgaaaUGGGUu -5'
13321 5' -56.3 NC_003409.1 + 94640 0.67 0.79504
Target:  5'- gCGCUcGUCgGGAGGCGACggauacGCCCAc -3'
miRNA:   3'- -GCGGuCGG-CCUCCGUUGaaa---UGGGUu -5'
13321 5' -56.3 NC_003409.1 + 55983 0.67 0.776284
Target:  5'- uCGUCAGgUGGAGGCuuGACgauUUGCCCc- -3'
miRNA:   3'- -GCGGUCgGCCUCCG--UUGa--AAUGGGuu -5'
13321 5' -56.3 NC_003409.1 + 102463 0.68 0.737235
Target:  5'- gGCCaAGCCGGuGG-GACUguagcUGCCCAGg -3'
miRNA:   3'- gCGG-UCGGCCuCCgUUGAa----AUGGGUU- -5'
13321 5' -56.3 NC_003409.1 + 119174 0.68 0.727209
Target:  5'- -cCCAGCCGGGuuuacGCAGCUgcguaUACCCAGc -3'
miRNA:   3'- gcGGUCGGCCUc----CGUUGAa----AUGGGUU- -5'
13321 5' -56.3 NC_003409.1 + 72943 0.69 0.662476
Target:  5'- uGCCugggGGCCuGGAGGCGACUcgucugcaaucggagGCCCAu -3'
miRNA:   3'- gCGG----UCGG-CCUCCGUUGAaa-------------UGGGUu -5'
13321 5' -56.3 NC_003409.1 + 109845 0.7 0.623834
Target:  5'- aCGCCgcGGCgGGAGGCggUggcGCCCGg -3'
miRNA:   3'- -GCGG--UCGgCCUCCGuuGaaaUGGGUu -5'
13321 5' -56.3 NC_003409.1 + 129150 0.7 0.602955
Target:  5'- aCGUUGGCUGGGGGCAggGCaaaACCCAAa -3'
miRNA:   3'- -GCGGUCGGCCUCCGU--UGaaaUGGGUU- -5'
13321 5' -56.3 NC_003409.1 + 52711 0.73 0.481499
Target:  5'- gGCUAGCCGGAGGCGcaaACUUcggaauuuCCUAAa -3'
miRNA:   3'- gCGGUCGGCCUCCGU---UGAAau------GGGUU- -5'
13321 5' -56.3 NC_003409.1 + 78955 1.06 0.002965
Target:  5'- gCGCCAGCCGGAGGCAACUUUACCCAAg -3'
miRNA:   3'- -GCGGUCGGCCUCCGUUGAAAUGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.