miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13322 3' -55.9 NC_003409.1 + 9865 0.66 0.880722
Target:  5'- -gUGAaGGUGGCCGugAucucGUUGGCCa -3'
miRNA:   3'- cgAUUaCCACCGGUugUc---CGACCGGc -5'
13322 3' -55.9 NC_003409.1 + 133764 0.66 0.880722
Target:  5'- --cAAUGuGUGGCCuagccACGGGCUGGg-- -3'
miRNA:   3'- cgaUUAC-CACCGGu----UGUCCGACCggc -5'
13322 3' -55.9 NC_003409.1 + 49155 0.66 0.873443
Target:  5'- gGCU--UGGUGGCCAuucgcacCAGGacgGaGCCGu -3'
miRNA:   3'- -CGAuuACCACCGGUu------GUCCga-C-CGGC- -5'
13322 3' -55.9 NC_003409.1 + 45898 0.67 0.84216
Target:  5'- cGCUAAUGGc-GCC--CGGGgUGGCCu -3'
miRNA:   3'- -CGAUUACCacCGGuuGUCCgACCGGc -5'
13322 3' -55.9 NC_003409.1 + 52119 0.67 0.841335
Target:  5'- -----cGGUGGCCGuCAGGaagacgaCUGGCUGc -3'
miRNA:   3'- cgauuaCCACCGGUuGUCC-------GACCGGC- -5'
13322 3' -55.9 NC_003409.1 + 87898 0.68 0.798698
Target:  5'- --gGAUGGUGGCCu-CAGGgcgcguCUGGUCu -3'
miRNA:   3'- cgaUUACCACCGGuuGUCC------GACCGGc -5'
13322 3' -55.9 NC_003409.1 + 113447 0.68 0.798698
Target:  5'- aGCgAcgGGcGGuCCAACAGGUgccUGGCCc -3'
miRNA:   3'- -CGaUuaCCaCC-GGUUGUCCG---ACCGGc -5'
13322 3' -55.9 NC_003409.1 + 54986 0.68 0.795956
Target:  5'- gGCaAGUGGagauuacuaaagucUGGCCGcaAGGCcGGCCGg -3'
miRNA:   3'- -CGaUUACC--------------ACCGGUugUCCGaCCGGC- -5'
13322 3' -55.9 NC_003409.1 + 31657 0.68 0.788578
Target:  5'- gGCUGgucuggGUGGUGugacggcuuggauGCCGACcgggaauuGGCUGGCCu -3'
miRNA:   3'- -CGAU------UACCAC-------------CGGUUGu-------CCGACCGGc -5'
13322 3' -55.9 NC_003409.1 + 49262 0.68 0.780166
Target:  5'- uGCUAuaAUGGaUGGCUAugGGGg-GGCUGu -3'
miRNA:   3'- -CGAU--UACC-ACCGGUugUCCgaCCGGC- -5'
13322 3' -55.9 NC_003409.1 + 128327 0.68 0.77069
Target:  5'- ----uUGGUGGCCGGCAGGUgucaugcacaGCCu -3'
miRNA:   3'- cgauuACCACCGGUUGUCCGac--------CGGc -5'
13322 3' -55.9 NC_003409.1 + 108741 0.69 0.741536
Target:  5'- aGCUAGc--UGGCCuGCAGgaaaaGCUGGCCGa -3'
miRNA:   3'- -CGAUUaccACCGGuUGUC-----CGACCGGC- -5'
13322 3' -55.9 NC_003409.1 + 51709 0.7 0.680828
Target:  5'- uCUGGUGGUGGCUAugGgGGCgGGaCGg -3'
miRNA:   3'- cGAUUACCACCGGUugU-CCGaCCgGC- -5'
13322 3' -55.9 NC_003409.1 + 68835 0.72 0.545582
Target:  5'- cGCUGGccucucuUGGUGGCCGACAcucGCgaUGGCCu -3'
miRNA:   3'- -CGAUU-------ACCACCGGUUGUc--CG--ACCGGc -5'
13322 3' -55.9 NC_003409.1 + 22410 0.73 0.477449
Target:  5'- -aUGAUGGUGGCagGACc-GCUGGCCGc -3'
miRNA:   3'- cgAUUACCACCGg-UUGucCGACCGGC- -5'
13322 3' -55.9 NC_003409.1 + 131101 0.73 0.477449
Target:  5'- aGCUGcUGGUGGCCcu-GGGUguagugGGCCGg -3'
miRNA:   3'- -CGAUuACCACCGGuugUCCGa-----CCGGC- -5'
13322 3' -55.9 NC_003409.1 + 66529 0.74 0.43992
Target:  5'- aCUGGUGGccuauuacuccggGGCCAaggaacuauucugcaACAGGCUGGCCc -3'
miRNA:   3'- cGAUUACCa------------CCGGU---------------UGUCCGACCGGc -5'
13322 3' -55.9 NC_003409.1 + 87169 0.76 0.346116
Target:  5'- --gGGUGGUGcGCCGGCggaGGGCgUGGCCGa -3'
miRNA:   3'- cgaUUACCAC-CGGUUG---UCCG-ACCGGC- -5'
13322 3' -55.9 NC_003409.1 + 108770 0.83 0.128215
Target:  5'- cGUgucuAUGGUGGCCAACAGGa-GGCCGg -3'
miRNA:   3'- -CGau--UACCACCGGUUGUCCgaCCGGC- -5'
13322 3' -55.9 NC_003409.1 + 80618 1.1 0.001979
Target:  5'- gGCUAAUGGUGGCCAACAGGCUGGCCGu -3'
miRNA:   3'- -CGAUUACCACCGGUUGUCCGACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.