miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13322 5' -53.3 NC_003409.1 + 74053 0.67 0.934423
Target:  5'- ---gGCgaGCGCCGGgagGAACGCGCUGg -3'
miRNA:   3'- cugaCGggCGUGGUUa--UUUGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 111192 0.67 0.929175
Target:  5'- aGCgGgCCGCACCcgucauucgAGUAAugGCGCCc -3'
miRNA:   3'- cUGaCgGGCGUGG---------UUAUUugCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 113433 0.67 0.929175
Target:  5'- cGAUcGCCUGCGCCAGcgacGGGCGguCCa -3'
miRNA:   3'- -CUGaCGGGCGUGGUUa---UUUGCguGGc -5'
13322 5' -53.3 NC_003409.1 + 121790 0.67 0.929175
Target:  5'- ---cGCCCGCAuCCGGccguccUGGGCaGCACCGc -3'
miRNA:   3'- cugaCGGGCGU-GGUU------AUUUG-CGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 16468 0.67 0.929175
Target:  5'- uGACUgcGCCUGCGCagg-AAACGC-CCGu -3'
miRNA:   3'- -CUGA--CGGGCGUGguuaUUUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 107649 0.67 0.923674
Target:  5'- cGCUGCCaggGCAucCCAGUcAGCGgGCCGc -3'
miRNA:   3'- cUGACGGg--CGU--GGUUAuUUGCgUGGC- -5'
13322 5' -53.3 NC_003409.1 + 96096 0.67 0.923674
Target:  5'- uGCUGCCUuaGCCAcuuaaguagGAAUGCACCc -3'
miRNA:   3'- cUGACGGGcgUGGUua-------UUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 112585 0.67 0.923109
Target:  5'- aGGCUGCCCuauuaaaGCACCGu--GACgGCGCgGa -3'
miRNA:   3'- -CUGACGGG-------CGUGGUuauUUG-CGUGgC- -5'
13322 5' -53.3 NC_003409.1 + 133300 0.68 0.91191
Target:  5'- aGACUGCCaggGCguuGCCAggaGUGGuggcgaugguGCGCACCGu -3'
miRNA:   3'- -CUGACGGg--CG---UGGU---UAUU----------UGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 25897 0.68 0.899142
Target:  5'- gGACaGCgCGUACCGAccUAuGCGCGCCc -3'
miRNA:   3'- -CUGaCGgGCGUGGUU--AUuUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 27684 0.68 0.892387
Target:  5'- uGCgGCCUGCGCCGGcgucgcuGugGCGCCu -3'
miRNA:   3'- cUGaCGGGCGUGGUUau-----UugCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 27833 0.68 0.885391
Target:  5'- cGGCgcaGgCCGCACCGAcugGAACGCAUgCGg -3'
miRNA:   3'- -CUGa--CgGGCGUGGUUa--UUUGCGUG-GC- -5'
13322 5' -53.3 NC_003409.1 + 59166 0.68 0.885391
Target:  5'- aGACcagaGCCCGCGCCAaaGUGaaggacauaucGACGC-CCGc -3'
miRNA:   3'- -CUGa---CGGGCGUGGU--UAU-----------UUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 19137 0.69 0.855079
Target:  5'- --aUGCCCGCcCCAcguGGCGCAUCa -3'
miRNA:   3'- cugACGGGCGuGGUuauUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 45659 0.69 0.855079
Target:  5'- aGCgGUCCGcCACCGc-GAACGCACCa -3'
miRNA:   3'- cUGaCGGGC-GUGGUuaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 38261 0.69 0.854276
Target:  5'- uGCUGgCCaugguccagcuugGCGCCcGUGAugGCGCCGu -3'
miRNA:   3'- cUGACgGG-------------CGUGGuUAUUugCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 111326 0.71 0.765474
Target:  5'- --gUGCCCGCcguuACCccaAGGCGCACCGu -3'
miRNA:   3'- cugACGGGCG----UGGuuaUUUGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 118407 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 118361 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 118315 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.