miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13323 5' -53 NC_003409.1 + 133968 0.66 0.966718
Target:  5'- -gCUCUGUugacaaUGuugugGGCCGGUGGUg -3'
miRNA:   3'- gaGAGAUAuag---ACua---CCGGCCACCGa -5'
13323 5' -53 NC_003409.1 + 128314 0.66 0.963339
Target:  5'- aUCUUUAacucAUUUGGUGGCCGGcaGGUg -3'
miRNA:   3'- gAGAGAUa---UAGACUACCGGCCa-CCGa -5'
13323 5' -53 NC_003409.1 + 76675 0.66 0.959727
Target:  5'- aCUCUUUAcugGUUUGGggguuggguugUGGCgUGGUGGCUg -3'
miRNA:   3'- -GAGAGAUa--UAGACU-----------ACCG-GCCACCGA- -5'
13323 5' -53 NC_003409.1 + 44164 0.66 0.955878
Target:  5'- gUCUCg--GUCgacugGAUGGCCGG-GGa- -3'
miRNA:   3'- gAGAGauaUAGa----CUACCGGCCaCCga -5'
13323 5' -53 NC_003409.1 + 41753 0.66 0.947447
Target:  5'- --gUCUGUA---GAUGGCCGGUGuGCc -3'
miRNA:   3'- gagAGAUAUagaCUACCGGCCAC-CGa -5'
13323 5' -53 NC_003409.1 + 124096 0.68 0.896961
Target:  5'- aUCaUCUAUcuGUCUGuaagGGaCCGGUGGUUg -3'
miRNA:   3'- gAG-AGAUA--UAGACua--CC-GGCCACCGA- -5'
13323 5' -53 NC_003409.1 + 46775 0.68 0.890086
Target:  5'- --gUCUGUAgugCUGGUGGCgGG-GGCc -3'
miRNA:   3'- gagAGAUAUa--GACUACCGgCCaCCGa -5'
13323 5' -53 NC_003409.1 + 88974 0.7 0.835447
Target:  5'- gUUUCUGUGUCgGAccaUGccuaaaGCCGGUGGCUc -3'
miRNA:   3'- gAGAGAUAUAGaCU---AC------CGGCCACCGA- -5'
13323 5' -53 NC_003409.1 + 115612 0.7 0.832007
Target:  5'- gUgUCUGUaAUCUGGcagcaugggguggGGCCGGUGGCc -3'
miRNA:   3'- gAgAGAUA-UAGACUa------------CCGGCCACCGa -5'
13323 5' -53 NC_003409.1 + 85219 0.7 0.808909
Target:  5'- gCUCUCUAUAUaucacGGCUaGGUGGCUg -3'
miRNA:   3'- -GAGAGAUAUAgacuaCCGG-CCACCGA- -5'
13323 5' -53 NC_003409.1 + 105031 0.77 0.443555
Target:  5'- -gCUC---GUCUGGUGGCUGGUGGCc -3'
miRNA:   3'- gaGAGauaUAGACUACCGGCCACCGa -5'
13323 5' -53 NC_003409.1 + 85349 1.08 0.005475
Target:  5'- cCUCUCUAUAUCUGAUGGCCGGUGGCUc -3'
miRNA:   3'- -GAGAGAUAUAGACUACCGGCCACCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.