miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13324 5' -54.9 NC_003409.1 + 133870 0.66 0.924315
Target:  5'- -uAUCCCuggggGCAGACcugcuACCGCUG-GCGg- -3'
miRNA:   3'- guUAGGG-----UGUCUG-----UGGCGACuCGCag -5'
13324 5' -54.9 NC_003409.1 + 26045 0.66 0.912723
Target:  5'- aCGGUCCUuguCGGAC-CCGC-GGGCGg- -3'
miRNA:   3'- -GUUAGGGu--GUCUGuGGCGaCUCGCag -5'
13324 5' -54.9 NC_003409.1 + 27821 0.66 0.900145
Target:  5'- aCGA-CCCAUcaACACCGCUGcuugaGGCGUg -3'
miRNA:   3'- -GUUaGGGUGucUGUGGCGAC-----UCGCAg -5'
13324 5' -54.9 NC_003409.1 + 97536 0.66 0.900145
Target:  5'- aAGUCCUugucGGCAUCGCUGAGCu-- -3'
miRNA:   3'- gUUAGGGugu-CUGUGGCGACUCGcag -5'
13324 5' -54.9 NC_003409.1 + 107324 0.67 0.8866
Target:  5'- ---aCCCGCGGACGCCcccGUccaAGCGUCu -3'
miRNA:   3'- guuaGGGUGUCUGUGG---CGac-UCGCAG- -5'
13324 5' -54.9 NC_003409.1 + 46469 0.67 0.879474
Target:  5'- gCAcgCCCcCGGGgGuuGCUGGGgGUCu -3'
miRNA:   3'- -GUuaGGGuGUCUgUggCGACUCgCAG- -5'
13324 5' -54.9 NC_003409.1 + 41811 0.67 0.872119
Target:  5'- ---aCCCACgAGACACCGCgucuccuGGCGg- -3'
miRNA:   3'- guuaGGGUG-UCUGUGGCGac-----UCGCag -5'
13324 5' -54.9 NC_003409.1 + 60669 0.68 0.848733
Target:  5'- aGGUCCCACuaaccGGGC-CCGC--GGCGUCc -3'
miRNA:   3'- gUUAGGGUG-----UCUGuGGCGacUCGCAG- -5'
13324 5' -54.9 NC_003409.1 + 34244 0.68 0.826969
Target:  5'- aCAGUCCCcuuUAGuucuuuagggaagacGCGCCGCUGcauGGCGUUg -3'
miRNA:   3'- -GUUAGGGu--GUC---------------UGUGGCGAC---UCGCAG- -5'
13324 5' -54.9 NC_003409.1 + 116418 0.68 0.814725
Target:  5'- uCGGUCCCGCccgGGGCGCgaaGCgccAGCGUCa -3'
miRNA:   3'- -GUUAGGGUG---UCUGUGg--CGac-UCGCAG- -5'
13324 5' -54.9 NC_003409.1 + 72056 0.69 0.796652
Target:  5'- uGAUUCCAgGGGCGCCGUgUGGGgGUa -3'
miRNA:   3'- gUUAGGGUgUCUGUGGCG-ACUCgCAg -5'
13324 5' -54.9 NC_003409.1 + 99860 0.69 0.796652
Target:  5'- aAAUCCCA-AGAUACUGCuUGAGaGUCg -3'
miRNA:   3'- gUUAGGGUgUCUGUGGCG-ACUCgCAG- -5'
13324 5' -54.9 NC_003409.1 + 36312 0.69 0.787379
Target:  5'- aGAUCCCGCAcACGgCGUUGAccaGCGUUg -3'
miRNA:   3'- gUUAGGGUGUcUGUgGCGACU---CGCAG- -5'
13324 5' -54.9 NC_003409.1 + 56044 0.69 0.77796
Target:  5'- gGAUUUCAgAGAgACC-CUGGGCGUCc -3'
miRNA:   3'- gUUAGGGUgUCUgUGGcGACUCGCAG- -5'
13324 5' -54.9 NC_003409.1 + 106223 0.7 0.74794
Target:  5'- ---aCCUACAGAgcgcugcCACUGCUGAGCaUCa -3'
miRNA:   3'- guuaGGGUGUCU-------GUGGCGACUCGcAG- -5'
13324 5' -54.9 NC_003409.1 + 10078 0.7 0.71893
Target:  5'- --uUCCCGCuGuCGCC-CUGAGCGUg -3'
miRNA:   3'- guuAGGGUGuCuGUGGcGACUCGCAg -5'
13324 5' -54.9 NC_003409.1 + 15999 0.72 0.625789
Target:  5'- gAAUCCCACacGGGCucGCCGCgcccGAGCuGUCg -3'
miRNA:   3'- gUUAGGGUG--UCUG--UGGCGa---CUCG-CAG- -5'
13324 5' -54.9 NC_003409.1 + 100015 0.74 0.512875
Target:  5'- -uGUCCCGCAGACACC--UGAgacccGCGUCg -3'
miRNA:   3'- guUAGGGUGUCUGUGGcgACU-----CGCAG- -5'
13324 5' -54.9 NC_003409.1 + 50910 0.76 0.391784
Target:  5'- --cUCCUGCAuACGCCGgaGAGCGUCa -3'
miRNA:   3'- guuAGGGUGUcUGUGGCgaCUCGCAG- -5'
13324 5' -54.9 NC_003409.1 + 86271 1.1 0.002597
Target:  5'- gCAAUCCCACAGACACCGCUGAGCGUCa -3'
miRNA:   3'- -GUUAGGGUGUCUGUGGCGACUCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.