miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13325 3' -63.2 NC_003409.1 + 132580 0.66 0.625335
Target:  5'- gGCCgaGAGGguggcgcCCAGaGUgCCCGaCACGGu -3'
miRNA:   3'- gCGGg-CUCCa------GGUC-CAgGGGC-GUGCC- -5'
13325 3' -63.2 NC_003409.1 + 105155 0.66 0.596386
Target:  5'- gGUUCGGGGcCCgGGGUUUCCGUaACGGa -3'
miRNA:   3'- gCGGGCUCCaGG-UCCAGGGGCG-UGCC- -5'
13325 3' -63.2 NC_003409.1 + 23191 0.66 0.586776
Target:  5'- gCGCCCGGGuGcacggggucaccUCCAGGUCaCgCCGCuaggUGGg -3'
miRNA:   3'- -GCGGGCUC-C------------AGGUCCAG-G-GGCGu---GCC- -5'
13325 3' -63.2 NC_003409.1 + 119818 0.66 0.586775
Target:  5'- gCGCCCGGGuGcacggggucaccUCCAGGUCaCgCCGCuaggUGGg -3'
miRNA:   3'- -GCGGGCUC-C------------AGGUCCAG-G-GGCGu---GCC- -5'
13325 3' -63.2 NC_003409.1 + 54510 0.66 0.577194
Target:  5'- cCGUCCGAGGaCaacGUCCCCGCAa-- -3'
miRNA:   3'- -GCGGGCUCCaGgucCAGGGGCGUgcc -5'
13325 3' -63.2 NC_003409.1 + 67826 0.66 0.577194
Target:  5'- gCGCCaCGAGGgCCcuucaucaGGGUCgCUGUAUGGu -3'
miRNA:   3'- -GCGG-GCUCCaGG--------UCCAGgGGCGUGCC- -5'
13325 3' -63.2 NC_003409.1 + 61589 0.68 0.48413
Target:  5'- aGCCUGAGGUgagaCCuacuGUCCCUGCuugaaGCGGa -3'
miRNA:   3'- gCGGGCUCCA----GGuc--CAGGGGCG-----UGCC- -5'
13325 3' -63.2 NC_003409.1 + 51922 0.68 0.475197
Target:  5'- gCGCUCGAGGcUCCGGGaa-CCGUGCGu -3'
miRNA:   3'- -GCGGGCUCC-AGGUCCaggGGCGUGCc -5'
13325 3' -63.2 NC_003409.1 + 133004 0.69 0.448908
Target:  5'- uGCCUGGGGaUCUGGGcgagaCCCCGUugGa -3'
miRNA:   3'- gCGGGCUCC-AGGUCCa----GGGGCGugCc -5'
13325 3' -63.2 NC_003409.1 + 19147 0.69 0.421776
Target:  5'- gGCCCGcGGGggcagcUCCAGGcgaccaaaauggCCCCGCGgGGg -3'
miRNA:   3'- gCGGGC-UCC------AGGUCCa-----------GGGGCGUgCC- -5'
13325 3' -63.2 NC_003409.1 + 112132 0.69 0.406955
Target:  5'- aCGCCCGGGGgCCAGGaCUCa-CugGGg -3'
miRNA:   3'- -GCGGGCUCCaGGUCCaGGGgcGugCC- -5'
13325 3' -63.2 NC_003409.1 + 112164 0.7 0.367547
Target:  5'- uGCCuuCGAGG-CCAGG-CCCUGCAucCGGc -3'
miRNA:   3'- gCGG--GCUCCaGGUCCaGGGGCGU--GCC- -5'
13325 3' -63.2 NC_003409.1 + 54781 0.71 0.337964
Target:  5'- uGCCCGAGGUCCAGccaaUCUGCAgUGGc -3'
miRNA:   3'- gCGGGCUCCAGGUCcag-GGGCGU-GCC- -5'
13325 3' -63.2 NC_003409.1 + 86769 1.1 0.000625
Target:  5'- gCGCCCGAGGUCCAGGUCCCCGCACGGg -3'
miRNA:   3'- -GCGGGCUCCAGGUCCAGGGGCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.