miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13326 3' -52.8 NC_003409.1 + 52564 0.66 0.952865
Target:  5'- ---gGCGGGGA--CgUGGCAGCUcuuauccaGGCa -3'
miRNA:   3'- uauaUGCCCCUaaGgAUCGUCGG--------UCG- -5'
13326 3' -52.8 NC_003409.1 + 15890 0.66 0.952865
Target:  5'- --uUGCauGGGUUCCUcguGGCGGUCGGCc -3'
miRNA:   3'- uauAUGccCCUAAGGA---UCGUCGGUCG- -5'
13326 3' -52.8 NC_003409.1 + 35172 0.67 0.94399
Target:  5'- gGUGUccaaGGGGAgggUUCUGG-GGCCGGCu -3'
miRNA:   3'- -UAUAug--CCCCUa--AGGAUCgUCGGUCG- -5'
13326 3' -52.8 NC_003409.1 + 108541 0.67 0.93409
Target:  5'- ---cGCGGuGGAaUCCUGGCGG-CAGa -3'
miRNA:   3'- uauaUGCC-CCUaAGGAUCGUCgGUCg -5'
13326 3' -52.8 NC_003409.1 + 134064 0.67 0.92875
Target:  5'- ---cAUGGGGAUaUCCaaggAGCGGUgaCAGCa -3'
miRNA:   3'- uauaUGCCCCUA-AGGa---UCGUCG--GUCG- -5'
13326 3' -52.8 NC_003409.1 + 117184 0.68 0.911166
Target:  5'- -aGUugGGGaGGUuaUCCauaAGCAGCCuaAGCg -3'
miRNA:   3'- uaUAugCCC-CUA--AGGa--UCGUCGG--UCG- -5'
13326 3' -52.8 NC_003409.1 + 35357 0.68 0.911166
Target:  5'- --cUAUGGcGGUUUCUaAGUAGCCGGCc -3'
miRNA:   3'- uauAUGCCcCUAAGGA-UCGUCGGUCG- -5'
13326 3' -52.8 NC_003409.1 + 82066 0.68 0.897474
Target:  5'- ---cGCGGGcuauuuuGGgaaCCUGGCAGCCAGg -3'
miRNA:   3'- uauaUGCCC-------CUaa-GGAUCGUCGGUCg -5'
13326 3' -52.8 NC_003409.1 + 80678 0.68 0.891264
Target:  5'- -aGUGCGGccacgUCUAGCAuGCCAGCg -3'
miRNA:   3'- uaUAUGCCccuaaGGAUCGU-CGGUCG- -5'
13326 3' -52.8 NC_003409.1 + 13151 0.69 0.861281
Target:  5'- ---gACGGGGAgaauguaaccUUCCgUGGCAG-CAGCc -3'
miRNA:   3'- uauaUGCCCCU----------AAGG-AUCGUCgGUCG- -5'
13326 3' -52.8 NC_003409.1 + 85107 0.7 0.836406
Target:  5'- ----cCGGGGGUUCU--GCAGCCgcaGGCg -3'
miRNA:   3'- uauauGCCCCUAAGGauCGUCGG---UCG- -5'
13326 3' -52.8 NC_003409.1 + 93821 0.7 0.827699
Target:  5'- ------cGGGAUUUCUGGCAGCCcGUg -3'
miRNA:   3'- uauaugcCCCUAAGGAUCGUCGGuCG- -5'
13326 3' -52.8 NC_003409.1 + 58680 0.7 0.827699
Target:  5'- aGUAgACGGGGGUUCgaUUAGCAGCgUAGg -3'
miRNA:   3'- -UAUaUGCCCCUAAG--GAUCGUCG-GUCg -5'
13326 3' -52.8 NC_003409.1 + 87797 0.72 0.721214
Target:  5'- gGUAUccACGGGGAcgUagaUGGCAGCCAGa -3'
miRNA:   3'- -UAUA--UGCCCCUaaGg--AUCGUCGGUCg -5'
13326 3' -52.8 NC_003409.1 + 79608 0.78 0.413802
Target:  5'- aGUGgccuCGGGG-UUCCuUGGCGGCCGGCc -3'
miRNA:   3'- -UAUau--GCCCCuAAGG-AUCGUCGGUCG- -5'
13326 3' -52.8 NC_003409.1 + 109174 0.82 0.239453
Target:  5'- ---aACGGGGGUUCgUGGCcGCCGGCu -3'
miRNA:   3'- uauaUGCCCCUAAGgAUCGuCGGUCG- -5'
13326 3' -52.8 NC_003409.1 + 87810 1.1 0.003701
Target:  5'- cAUAUACGGGGAUUCCUAGCAGCCAGCu -3'
miRNA:   3'- -UAUAUGCCCCUAAGGAUCGUCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.