miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13326 5' -58.8 NC_003409.1 + 108699 0.66 0.751286
Target:  5'- uCUGCCgCCA---GGAUUCCaCCGCGg -3'
miRNA:   3'- -GACGGgGGUcaaCCUAAGGcGGCGUg -5'
13326 5' -58.8 NC_003409.1 + 118370 0.66 0.751286
Target:  5'- -cGCgCCgGGUuccUGGggUgCGCCGCGCc -3'
miRNA:   3'- gaCGgGGgUCA---ACCuaAgGCGGCGUG- -5'
13326 5' -58.8 NC_003409.1 + 118324 0.66 0.751286
Target:  5'- -cGCgCCgGGUuccUGGggUgCGCCGCGCc -3'
miRNA:   3'- gaCGgGGgUCA---ACCuaAgGCGGCGUG- -5'
13326 5' -58.8 NC_003409.1 + 118416 0.66 0.751286
Target:  5'- -cGCgCCgGGUuccUGGggUgCGCCGCGCc -3'
miRNA:   3'- gaCGgGGgUCA---ACCuaAgGCGGCGUG- -5'
13326 5' -58.8 NC_003409.1 + 30508 0.67 0.722102
Target:  5'- -cGCCCCCAGUUcauguUUCCaucGCCGCu- -3'
miRNA:   3'- gaCGGGGGUCAAccu--AAGG---CGGCGug -5'
13326 5' -58.8 NC_003409.1 + 95544 0.67 0.712209
Target:  5'- gCUGUCCUUAGUUGGcg-CCGCUGgGg -3'
miRNA:   3'- -GACGGGGGUCAACCuaaGGCGGCgUg -5'
13326 5' -58.8 NC_003409.1 + 16641 0.67 0.682159
Target:  5'- -aGCCCCCAGacgGGcGUUUC-CUGCGCa -3'
miRNA:   3'- gaCGGGGGUCaa-CC-UAAGGcGGCGUG- -5'
13326 5' -58.8 NC_003409.1 + 11179 0.67 0.682159
Target:  5'- --cUCCCguGUUGGGgcUCCGCCGCu- -3'
miRNA:   3'- gacGGGGguCAACCUa-AGGCGGCGug -5'
13326 5' -58.8 NC_003409.1 + 133719 0.68 0.651741
Target:  5'- uCUGCCCCCAG--GGAaUCauaacaGCCuGCAUa -3'
miRNA:   3'- -GACGGGGGUCaaCCUaAGg-----CGG-CGUG- -5'
13326 5' -58.8 NC_003409.1 + 45789 0.68 0.641559
Target:  5'- uCUGCCCCCAGUUucauuugccaGGcaaaacaCCGCaUGCACc -3'
miRNA:   3'- -GACGGGGGUCAA----------CCuaa----GGCG-GCGUG- -5'
13326 5' -58.8 NC_003409.1 + 116588 0.68 0.621182
Target:  5'- gCUGCCCCUAGaccUGucUaCCGUCGCACc -3'
miRNA:   3'- -GACGGGGGUCa--ACcuAaGGCGGCGUG- -5'
13326 5' -58.8 NC_003409.1 + 82648 0.69 0.560479
Target:  5'- -cGCCCCguGUUG--UUCUGCCGUAUu -3'
miRNA:   3'- gaCGGGGguCAACcuAAGGCGGCGUG- -5'
13326 5' -58.8 NC_003409.1 + 11861 0.69 0.560479
Target:  5'- -gGCCCuCCAGgcUGGcUUCgGUCGCGCa -3'
miRNA:   3'- gaCGGG-GGUCa-ACCuAAGgCGGCGUG- -5'
13326 5' -58.8 NC_003409.1 + 113965 0.83 0.07919
Target:  5'- -aGCCCCCGuGgcGGAUUCgGCCGCACa -3'
miRNA:   3'- gaCGGGGGU-CaaCCUAAGgCGGCGUG- -5'
13326 5' -58.8 NC_003409.1 + 87775 1.1 0.001158
Target:  5'- gCUGCCCCCAGUUGGAUUCCGCCGCACg -3'
miRNA:   3'- -GACGGGGGUCAACCUAAGGCGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.