miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13327 3' -59.4 NC_003409.1 + 51141 0.66 0.716746
Target:  5'- uACGgU-ACCGGCCCUaaaaaCuGGCCCUCu -3'
miRNA:   3'- uUGCgAcUGGCCGGGAa----GuCUGGGAG- -5'
13327 3' -59.4 NC_003409.1 + 54804 0.66 0.696779
Target:  5'- aGugGCcGGCCGGCCUUgcggcCAGACUUUa -3'
miRNA:   3'- -UugCGaCUGGCCGGGAa----GUCUGGGAg -5'
13327 3' -59.4 NC_003409.1 + 97998 0.66 0.68671
Target:  5'- --aGuCUGA-CGGCUCUUCAGugCCUg -3'
miRNA:   3'- uugC-GACUgGCCGGGAAGUCugGGAg -5'
13327 3' -59.4 NC_003409.1 + 5039 0.67 0.676596
Target:  5'- aGGCGCcgUGcCCGGUuuUUCuGACCCUUu -3'
miRNA:   3'- -UUGCG--ACuGGCCGggAAGuCUGGGAG- -5'
13327 3' -59.4 NC_003409.1 + 11837 0.67 0.666446
Target:  5'- aAAC-CUGACCcacGUCCUccagCAGGCCCUCc -3'
miRNA:   3'- -UUGcGACUGGc--CGGGAa---GUCUGGGAG- -5'
13327 3' -59.4 NC_003409.1 + 77271 0.67 0.656268
Target:  5'- uACGCguaccugacaUGGCCGcGCCCaggggCAGACCCa- -3'
miRNA:   3'- uUGCG----------ACUGGC-CGGGaa---GUCUGGGag -5'
13327 3' -59.4 NC_003409.1 + 91968 0.7 0.495878
Target:  5'- gGACGCguACCGGgaCCCUUCAGGuuCUCg -3'
miRNA:   3'- -UUGCGacUGGCC--GGGAAGUCUggGAG- -5'
13327 3' -59.4 NC_003409.1 + 88134 1.07 0.001365
Target:  5'- cAACGCUGACCGGCCCUUCAGACCCUCa -3'
miRNA:   3'- -UUGCGACUGGCCGGGAAGUCUGGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.