Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13327 | 3' | -59.4 | NC_003409.1 | + | 51141 | 0.66 | 0.716746 |
Target: 5'- uACGgU-ACCGGCCCUaaaaaCuGGCCCUCu -3' miRNA: 3'- uUGCgAcUGGCCGGGAa----GuCUGGGAG- -5' |
|||||||
13327 | 3' | -59.4 | NC_003409.1 | + | 54804 | 0.66 | 0.696779 |
Target: 5'- aGugGCcGGCCGGCCUUgcggcCAGACUUUa -3' miRNA: 3'- -UugCGaCUGGCCGGGAa----GUCUGGGAg -5' |
|||||||
13327 | 3' | -59.4 | NC_003409.1 | + | 97998 | 0.66 | 0.68671 |
Target: 5'- --aGuCUGA-CGGCUCUUCAGugCCUg -3' miRNA: 3'- uugC-GACUgGCCGGGAAGUCugGGAg -5' |
|||||||
13327 | 3' | -59.4 | NC_003409.1 | + | 5039 | 0.67 | 0.676596 |
Target: 5'- aGGCGCcgUGcCCGGUuuUUCuGACCCUUu -3' miRNA: 3'- -UUGCG--ACuGGCCGggAAGuCUGGGAG- -5' |
|||||||
13327 | 3' | -59.4 | NC_003409.1 | + | 11837 | 0.67 | 0.666446 |
Target: 5'- aAAC-CUGACCcacGUCCUccagCAGGCCCUCc -3' miRNA: 3'- -UUGcGACUGGc--CGGGAa---GUCUGGGAG- -5' |
|||||||
13327 | 3' | -59.4 | NC_003409.1 | + | 77271 | 0.67 | 0.656268 |
Target: 5'- uACGCguaccugacaUGGCCGcGCCCaggggCAGACCCa- -3' miRNA: 3'- uUGCG----------ACUGGC-CGGGaa---GUCUGGGag -5' |
|||||||
13327 | 3' | -59.4 | NC_003409.1 | + | 91968 | 0.7 | 0.495878 |
Target: 5'- gGACGCguACCGGgaCCCUUCAGGuuCUCg -3' miRNA: 3'- -UUGCGacUGGCC--GGGAAGUCUggGAG- -5' |
|||||||
13327 | 3' | -59.4 | NC_003409.1 | + | 88134 | 1.07 | 0.001365 |
Target: 5'- cAACGCUGACCGGCCCUUCAGACCCUCa -3' miRNA: 3'- -UUGCGACUGGCCGGGAAGUCUGGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home