Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13328 | 5' | -62.1 | NC_003409.1 | + | 9618 | 0.68 | 0.466917 |
Target: 5'- gUUGCUGGgGGuuGUGCUGCaugaggaUUCGUu -3' miRNA: 3'- gGACGACCgCCggCACGACGc------GAGCA- -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 12266 | 0.7 | 0.381362 |
Target: 5'- -gUGCgGGgGGCCGgauUGCUGCaCUCGUa -3' miRNA: 3'- ggACGaCCgCCGGC---ACGACGcGAGCA- -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 23357 | 0.66 | 0.580955 |
Target: 5'- aCCUGgaGGUGaccCCGUGCacccggGCGCUCu- -3' miRNA: 3'- -GGACgaCCGCc--GGCACGa-----CGCGAGca -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 83765 | 0.7 | 0.397627 |
Target: 5'- aCCUGgUGGCGGUCugGUGUUGUGUUUa- -3' miRNA: 3'- -GGACgACCGCCGG--CACGACGCGAGca -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 89969 | 1.08 | 0.000799 |
Target: 5'- aCCUGCUGGCGGCCGUGCUGCGCUCGUu -3' miRNA: 3'- -GGACGACCGCCGGCACGACGCGAGCA- -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 94766 | 0.67 | 0.522744 |
Target: 5'- uCCUGCcuuUGGCGGCaGUGUUGCucacCUUGg -3' miRNA: 3'- -GGACG---ACCGCCGgCACGACGc---GAGCa -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 97094 | 0.67 | 0.522744 |
Target: 5'- ---aCUGGCGGCCuugguGUGCaGCaGCUCGUc -3' miRNA: 3'- ggacGACCGCCGG-----CACGaCG-CGAGCA- -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 98725 | 0.68 | 0.476016 |
Target: 5'- gCCUGUUGGCGuCCGUGgUGCcaaccCUCGc -3' miRNA: 3'- -GGACGACCGCcGGCACgACGc----GAGCa -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 104924 | 0.66 | 0.571133 |
Target: 5'- gCCUGCUcuGGCGGgCGgucuugGUgagGCGgUCGUg -3' miRNA: 3'- -GGACGA--CCGCCgGCa-----CGa--CGCgAGCA- -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 107536 | 0.67 | 0.551617 |
Target: 5'- cCCUuCcGGCGGCCGUGgguccaGCGCUCu- -3' miRNA: 3'- -GGAcGaCCGCCGGCACga----CGCGAGca -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 112938 | 0.68 | 0.503821 |
Target: 5'- cCUUGCcaaGCGGgCGcGUUGCGCUCGg -3' miRNA: 3'- -GGACGac-CGCCgGCaCGACGCGAGCa -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 113591 | 0.71 | 0.342685 |
Target: 5'- cCCgucGCUGGCGcaggcgaucGCCGUGUUGCGCgUGg -3' miRNA: 3'- -GGa--CGACCGC---------CGGCACGACGCGaGCa -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 119653 | 0.66 | 0.580955 |
Target: 5'- aCCUGgaGGUGaccCCGUGCacccggGCGCUCu- -3' miRNA: 3'- -GGACgaCCGCc--GGCACGa-----CGCGAGca -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 125734 | 0.7 | 0.381362 |
Target: 5'- uCCUGCUGcuGUGGCCcUGCUGCugugGCUCc- -3' miRNA: 3'- -GGACGAC--CGCCGGcACGACG----CGAGca -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 127550 | 0.68 | 0.457909 |
Target: 5'- uUUGCUGGCGGCgCGUGCcaucgGUGgccaUCGg -3' miRNA: 3'- gGACGACCGCCG-GCACGa----CGCg---AGCa -5' |
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13328 | 5' | -62.1 | NC_003409.1 | + | 131100 | 0.67 | 0.513247 |
Target: 5'- gCUGCUGGUGGCCcuggGUGUagUGgGC-CGg -3' miRNA: 3'- gGACGACCGCCGG----CACG--ACgCGaGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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