Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13329 | 3' | -61.5 | NC_003409.1 | + | 15430 | 0.66 | 0.61299 |
Target: 5'- -cGCCUUUGUCAUCAuGggGCUCgCCCGu -3' miRNA: 3'- gaCGGAGACAGUGGU-CgaCGGG-GGGU- -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 80242 | 0.66 | 0.57295 |
Target: 5'- -gGCCUCcGUCuCCAGaCUGUCUCUCGc -3' miRNA: 3'- gaCGGAGaCAGuGGUC-GACGGGGGGU- -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 92277 | 0.68 | 0.495165 |
Target: 5'- -gGCCUCUGggACUugggAGCaaauaacgaUGCCCCCCGu -3' miRNA: 3'- gaCGGAGACagUGG----UCG---------ACGGGGGGU- -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 21812 | 0.68 | 0.495165 |
Target: 5'- gUGCUUCUGU--CCAGCUGguaccccaCCUCCCAa -3' miRNA: 3'- gACGGAGACAguGGUCGAC--------GGGGGGU- -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 87078 | 0.68 | 0.484825 |
Target: 5'- -cGCgUCUguauccaGUCGCCAuGUUGUCCCCCu -3' miRNA: 3'- gaCGgAGA-------CAGUGGU-CGACGGGGGGu -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 57235 | 0.68 | 0.467214 |
Target: 5'- aCUGCUUCUGaaaCGCCAGCUgguGCUCCUg- -3' miRNA: 3'- -GACGGAGACa--GUGGUCGA---CGGGGGgu -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 28645 | 0.69 | 0.44904 |
Target: 5'- aCUGCC-CaGUCACCuuGGCUGCCgCUUCAc -3' miRNA: 3'- -GACGGaGaCAGUGG--UCGACGG-GGGGU- -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 18962 | 0.69 | 0.404543 |
Target: 5'- aCUGCCcccgcggggccauUUUgGUCGCCuggAGCUGCCCCCgCGg -3' miRNA: 3'- -GACGG-------------AGA-CAGUGG---UCGACGGGGG-GU- -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 92914 | 0.7 | 0.388691 |
Target: 5'- -gGCCUCUGUCauggguucagGCCAGgaGCUUCCUg -3' miRNA: 3'- gaCGGAGACAG----------UGGUCgaCGGGGGGu -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 35205 | 0.72 | 0.305245 |
Target: 5'- uUGUCUgaGUCACCAGCUGaUCCCaaCCAa -3' miRNA: 3'- gACGGAgaCAGUGGUCGAC-GGGG--GGU- -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 27126 | 0.72 | 0.305245 |
Target: 5'- -aGCCgCUG-CAUCAGCUGCCUaaCCCAg -3' miRNA: 3'- gaCGGaGACaGUGGUCGACGGG--GGGU- -5' |
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13329 | 3' | -61.5 | NC_003409.1 | + | 95727 | 1.08 | 0.000813 |
Target: 5'- gCUGCCUCUGUCACCAGCUGCCCCCCAg -3' miRNA: 3'- -GACGGAGACAGUGGUCGACGGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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