Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13329 | 5' | -51.7 | NC_003409.1 | + | 36384 | 0.7 | 0.851083 |
Target: 5'- gAACguugGGGGugGGuCugGGAGGGGCaCUCa -3' miRNA: 3'- -UUGa---UUCCugUC-GugUUUCUCCG-GAG- -5' |
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13329 | 5' | -51.7 | NC_003409.1 | + | 84023 | 0.71 | 0.777476 |
Target: 5'- ----uGGGGCAGCAaGAGGGGGCCg- -3' miRNA: 3'- uugauUCCUGUCGUgUUUCUCCGGag -5' |
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13329 | 5' | -51.7 | NC_003409.1 | + | 119389 | 0.73 | 0.715813 |
Target: 5'- -uCUAGGGAUaggGGC-CAAugGGAGGCCUCc -3' miRNA: 3'- uuGAUUCCUG---UCGuGUU--UCUCCGGAG- -5' |
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13329 | 5' | -51.7 | NC_003409.1 | + | 23621 | 0.73 | 0.715813 |
Target: 5'- -uCUAGGGAUaggGGC-CAAugGGAGGCCUCc -3' miRNA: 3'- uuGAUUCCUG---UCGuGUU--UCUCCGGAG- -5' |
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13329 | 5' | -51.7 | NC_003409.1 | + | 113195 | 0.73 | 0.694493 |
Target: 5'- --aUAGGGGCGGCAgAuaccggccuccGGGAGGCCUUg -3' miRNA: 3'- uugAUUCCUGUCGUgU-----------UUCUCCGGAG- -5' |
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13329 | 5' | -51.7 | NC_003409.1 | + | 95693 | 1.08 | 0.005244 |
Target: 5'- cAACUAAGGACAGCACAAAGAGGCCUCa -3' miRNA: 3'- -UUGAUUCCUGUCGUGUUUCUCCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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