miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1333 3' -55.1 NC_001335.1 + 32319 0.66 0.713282
Target:  5'- gAGUUGGUGGaac-GAGGucaGCCaGGGGGCa -3'
miRNA:   3'- -UCAACCGUCgucuUUCC---UGG-CCCUCG- -5'
1333 3' -55.1 NC_001335.1 + 29751 0.66 0.691431
Target:  5'- uGGUUGGCcgauCAG-GAGGuCUGGGAGg -3'
miRNA:   3'- -UCAACCGuc--GUCuUUCCuGGCCCUCg -5'
1333 3' -55.1 NC_001335.1 + 17494 0.66 0.680412
Target:  5'- ---aGGCAGCGGAAcu-GCCGGGGa- -3'
miRNA:   3'- ucaaCCGUCGUCUUuccUGGCCCUcg -5'
1333 3' -55.1 NC_001335.1 + 9871 0.66 0.669345
Target:  5'- --gUGGCuucGGCGGugccguGGGGCUcgGGGAGCc -3'
miRNA:   3'- ucaACCG---UCGUCuu----UCCUGG--CCCUCG- -5'
1333 3' -55.1 NC_001335.1 + 16059 0.66 0.669345
Target:  5'- ---cGGCGGCAGccGGGGGCUcGGAGa -3'
miRNA:   3'- ucaaCCGUCGUCu-UUCCUGGcCCUCg -5'
1333 3' -55.1 NC_001335.1 + 35784 0.66 0.658243
Target:  5'- cGggGGCuauGCAGAGGcGAUCaGGAGCc -3'
miRNA:   3'- uCaaCCGu--CGUCUUUcCUGGcCCUCG- -5'
1333 3' -55.1 NC_001335.1 + 39294 0.68 0.569396
Target:  5'- ---gGGCGGCGaAGAGGucuccgggguACCGGGuGCa -3'
miRNA:   3'- ucaaCCGUCGUcUUUCC----------UGGCCCuCG- -5'
1333 3' -55.1 NC_001335.1 + 50200 0.69 0.525933
Target:  5'- cGUccgGGCAGgAGAAGccuuGACCGGaGGGCa -3'
miRNA:   3'- uCAa--CCGUCgUCUUUc---CUGGCC-CUCG- -5'
1333 3' -55.1 NC_001335.1 + 15743 0.69 0.493128
Target:  5'- ---aGGCGGCucgagagAGAAGGGAaaGGGAGg -3'
miRNA:   3'- ucaaCCGUCG-------UCUUUCCUggCCCUCg -5'
1333 3' -55.1 NC_001335.1 + 15528 0.7 0.431549
Target:  5'- uGGUgGGCAGCAGuaccggggcuGGACCGaGGAccGCu -3'
miRNA:   3'- -UCAaCCGUCGUCuuu-------CCUGGC-CCU--CG- -5'
1333 3' -55.1 NC_001335.1 + 2351 0.73 0.302841
Target:  5'- ---cGGCGaCAGGaacuaccaGAGGACUGGGAGCu -3'
miRNA:   3'- ucaaCCGUcGUCU--------UUCCUGGCCCUCG- -5'
1333 3' -55.1 NC_001335.1 + 1254 0.75 0.227792
Target:  5'- --gUGGCGGCGGAAGuGGAgCCGGcGGCg -3'
miRNA:   3'- ucaACCGUCGUCUUU-CCU-GGCCcUCG- -5'
1333 3' -55.1 NC_001335.1 + 7456 0.75 0.221812
Target:  5'- uGUgGGCGuuGCAGAucgacAGGGugCGGGAGCc -3'
miRNA:   3'- uCAaCCGU--CGUCU-----UUCCugGCCCUCG- -5'
1333 3' -55.1 NC_001335.1 + 2469 1.11 0.000661
Target:  5'- cAGUUGGCAGCAGAAAGGACCGGGAGCc -3'
miRNA:   3'- -UCAACCGUCGUCUUUCCUGGCCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.