miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13330 5' -56 NC_003409.1 + 110044 0.66 0.89677
Target:  5'- gGCAAGGccguaGGGGUacgGUGGcagugUUGCgCCGGGCg -3'
miRNA:   3'- -UGUUCUa----CCCCG---CACC-----AAUG-GGCCUG- -5'
13330 5' -56 NC_003409.1 + 1346 0.66 0.890068
Target:  5'- uACAAGGUGGGaCGUGGUcugaACCaacGGCa -3'
miRNA:   3'- -UGUUCUACCCcGCACCAa---UGGgc-CUG- -5'
13330 5' -56 NC_003409.1 + 114401 0.66 0.890068
Target:  5'- aGCGGGGUGGGGC-UGGcaagGCCCccaaagcgcGACa -3'
miRNA:   3'- -UGUUCUACCCCGcACCaa--UGGGc--------CUG- -5'
13330 5' -56 NC_003409.1 + 87902 0.66 0.86859
Target:  5'- cACGGGAUGguggccucaGGGCGcgucUGGUcuCCCGGAg -3'
miRNA:   3'- -UGUUCUAC---------CCCGC----ACCAauGGGCCUg -5'
13330 5' -56 NC_003409.1 + 31670 0.66 0.860991
Target:  5'- cCAGGccuaAUGGGGUGUGGggGCCa-GAUg -3'
miRNA:   3'- uGUUC----UACCCCGCACCaaUGGgcCUG- -5'
13330 5' -56 NC_003409.1 + 32728 0.67 0.845167
Target:  5'- gAUAAGGUGGGGCucuUGaGggGCCUGG-Cg -3'
miRNA:   3'- -UGUUCUACCCCGc--AC-CaaUGGGCCuG- -5'
13330 5' -56 NC_003409.1 + 116463 0.67 0.836955
Target:  5'- gGCAucgguGGAUGGGGUGcGaagGCCCGGGa -3'
miRNA:   3'- -UGU-----UCUACCCCGCaCcaaUGGGCCUg -5'
13330 5' -56 NC_003409.1 + 8954 0.67 0.819971
Target:  5'- -gAAGAUccugGGGGUGUGGgggaaCUGGACg -3'
miRNA:   3'- ugUUCUA----CCCCGCACCaaug-GGCCUG- -5'
13330 5' -56 NC_003409.1 + 18923 0.68 0.811213
Target:  5'- cACAGGAgcgccauccgcGGGGCcaucuUGGUcGCCUGGACu -3'
miRNA:   3'- -UGUUCUa----------CCCCGc----ACCAaUGGGCCUG- -5'
13330 5' -56 NC_003409.1 + 82256 0.68 0.765117
Target:  5'- -aGGGGUGGGGgGaUGGUccgCCGGGCg -3'
miRNA:   3'- ugUUCUACCCCgC-ACCAaugGGCCUG- -5'
13330 5' -56 NC_003409.1 + 91475 0.68 0.765117
Target:  5'- gGCAAGAacaucUGGGGUGaUGcUgcCCCGGACc -3'
miRNA:   3'- -UGUUCU-----ACCCCGC-ACcAauGGGCCUG- -5'
13330 5' -56 NC_003409.1 + 11490 0.69 0.73594
Target:  5'- cCGGGgcGacccGGCGUGGUUGCCgUGGACa -3'
miRNA:   3'- uGUUCuaCc---CCGCACCAAUGG-GCCUG- -5'
13330 5' -56 NC_003409.1 + 19822 0.69 0.73594
Target:  5'- aACGAG--GGGGaccccGGUUGCCUGGACg -3'
miRNA:   3'- -UGUUCuaCCCCgca--CCAAUGGGCCUG- -5'
13330 5' -56 NC_003409.1 + 111778 0.73 0.512136
Target:  5'- cACAuaauuGGAUGGGGCaUGGgcACCaCGGAUg -3'
miRNA:   3'- -UGU-----UCUACCCCGcACCaaUGG-GCCUG- -5'
13330 5' -56 NC_003409.1 + 97940 1.08 0.00283
Target:  5'- aACAAGAUGGGGCGUGGUUACCCGGACc -3'
miRNA:   3'- -UGUUCUACCCCGCACCAAUGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.