miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13331 3' -55.5 NC_003409.1 + 67809 0.66 0.910552
Target:  5'- --gGUGCGGCG-CgCAgGgGGCgCCACGa -3'
miRNA:   3'- uuaUACGCCGCaG-GUgUgCUG-GGUGC- -5'
13331 3' -55.5 NC_003409.1 + 111045 0.66 0.910552
Target:  5'- ----cGCGGCGggCCgcaGCACGAgaguUCCACGu -3'
miRNA:   3'- uuauaCGCCGCa-GG---UGUGCU----GGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 109281 0.66 0.897894
Target:  5'- gGAUcUGCGGUGuUCCGgGCaGACCC-CGu -3'
miRNA:   3'- -UUAuACGCCGC-AGGUgUG-CUGGGuGC- -5'
13331 3' -55.5 NC_003409.1 + 110277 0.66 0.884287
Target:  5'- --gGUGCGGCGgCCAgggaggcgaAUGGCUCGCGa -3'
miRNA:   3'- uuaUACGCCGCaGGUg--------UGCUGGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 106788 0.67 0.869764
Target:  5'- --gGUGaGGCGUUCACcgGgGGCCCGCa -3'
miRNA:   3'- uuaUACgCCGCAGGUG--UgCUGGGUGc -5'
13331 3' -55.5 NC_003409.1 + 22242 0.67 0.869014
Target:  5'- ----cGCGuGCG-CCGCuucgcagGCGACCCGCa -3'
miRNA:   3'- uuauaCGC-CGCaGGUG-------UGCUGGGUGc -5'
13331 3' -55.5 NC_003409.1 + 11664 0.67 0.862171
Target:  5'- --aAUGUGGUGUCCACGgcaaCCACGc -3'
miRNA:   3'- uuaUACGCCGCAGGUGUgcugGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 13492 0.67 0.862171
Target:  5'- --aGUGCGGgGUCCguGCAUGAUgCCAgGg -3'
miRNA:   3'- uuaUACGCCgCAGG--UGUGCUG-GGUgC- -5'
13331 3' -55.5 NC_003409.1 + 83128 0.67 0.854364
Target:  5'- ----cGUGGCGcacaaCCGuCugGGCCCACGu -3'
miRNA:   3'- uuauaCGCCGCa----GGU-GugCUGGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 19576 0.68 0.821145
Target:  5'- aGAUAUGUGGCGUCguauacaaCACgcgcguggucugGCGACCCuuGCGc -3'
miRNA:   3'- -UUAUACGCCGCAG--------GUG------------UGCUGGG--UGC- -5'
13331 3' -55.5 NC_003409.1 + 130249 0.69 0.785108
Target:  5'- cAUGUcCGGCG-CCAcCACGuaGCCCGCGg -3'
miRNA:   3'- uUAUAcGCCGCaGGU-GUGC--UGGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 67516 0.69 0.775723
Target:  5'- ----cGCGGgGUCCAggugcaGCGACCCAa- -3'
miRNA:   3'- uuauaCGCCgCAGGUg-----UGCUGGGUgc -5'
13331 3' -55.5 NC_003409.1 + 54448 0.69 0.774777
Target:  5'- --gAUGCGGUGUgUGCGCGAggacgcgcacgucUCCACGg -3'
miRNA:   3'- uuaUACGCCGCAgGUGUGCU-------------GGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 68501 0.69 0.756568
Target:  5'- ----cGCGGCua-UGCugGACCCACGg -3'
miRNA:   3'- uuauaCGCCGcagGUGugCUGGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 126988 0.7 0.727012
Target:  5'- --gGUGUGGgGUCCACAuuccCGGCCguCGa -3'
miRNA:   3'- uuaUACGCCgCAGGUGU----GCUGGguGC- -5'
13331 3' -55.5 NC_003409.1 + 119959 0.7 0.716979
Target:  5'- ----cGCGGCGcCCACGCcGGCgCCugGc -3'
miRNA:   3'- uuauaCGCCGCaGGUGUG-CUG-GGugC- -5'
13331 3' -55.5 NC_003409.1 + 113523 0.7 0.676198
Target:  5'- -uUGUGCGGCGcagcagcugCUugGCG-CCCACGu -3'
miRNA:   3'- uuAUACGCCGCa--------GGugUGCuGGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 110894 0.71 0.665887
Target:  5'- ---cUGCGGCccgCCGCGgucauUGACCCACGg -3'
miRNA:   3'- uuauACGCCGca-GGUGU-----GCUGGGUGC- -5'
13331 3' -55.5 NC_003409.1 + 101101 1.07 0.003578
Target:  5'- aAAUAUGCGGCGUCCACACGACCCACGg -3'
miRNA:   3'- -UUAUACGCCGCAGGUGUGCUGGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.