miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13331 5' -61.1 NC_003409.1 + 74072 0.66 0.64765
Target:  5'- cGCccGAGGCUucuggUUG-GGCGaGCGCCGg -3'
miRNA:   3'- aCGuaCUCCGG-----AACgCCGUcCGCGGC- -5'
13331 5' -61.1 NC_003409.1 + 27666 0.66 0.637564
Target:  5'- cGCAUGcguuccaGUCggUGCGGCcuGCGCCGg -3'
miRNA:   3'- aCGUACuc-----CGGa-ACGCCGucCGCGGC- -5'
13331 5' -61.1 NC_003409.1 + 32859 0.66 0.637564
Target:  5'- cUGCAggcugcuCCUUGCGGCGGGCuacuGCCu -3'
miRNA:   3'- -ACGUacucc--GGAACGCCGUCCG----CGGc -5'
13331 5' -61.1 NC_003409.1 + 110044 0.66 0.625455
Target:  5'- gGCA--AGGCCguagggguacgGUGGCAGuguuGCGCCGg -3'
miRNA:   3'- aCGUacUCCGGaa---------CGCCGUC----CGCGGC- -5'
13331 5' -61.1 NC_003409.1 + 14236 0.66 0.62142
Target:  5'- gUGCggGAGGUUUUGCGucuuguaguccgccaGCGGGCGgCu -3'
miRNA:   3'- -ACGuaCUCCGGAACGC---------------CGUCCGCgGc -5'
13331 5' -61.1 NC_003409.1 + 119793 0.66 0.617387
Target:  5'- cGCGUGccAGGCgc--CGGCguGGGCGCCGc -3'
miRNA:   3'- aCGUAC--UCCGgaacGCCG--UCCGCGGC- -5'
13331 5' -61.1 NC_003409.1 + 22393 0.66 0.617387
Target:  5'- cGCAacaauccGAGGCCaugaugGUGGCAGGacCGCUGg -3'
miRNA:   3'- aCGUa------CUCCGGaa----CGCCGUCC--GCGGC- -5'
13331 5' -61.1 NC_003409.1 + 112955 0.66 0.616378
Target:  5'- cGCGUGGcccgcgcGGcCCUUGCcaaGCGGGCGCg- -3'
miRNA:   3'- aCGUACU-------CC-GGAACGc--CGUCCGCGgc -5'
13331 5' -61.1 NC_003409.1 + 93570 0.66 0.614362
Target:  5'- uUGUuuaggGAGGCCgccaggaaacaggcgGCGGCAGuCGCCa -3'
miRNA:   3'- -ACGua---CUCCGGaa-------------CGCCGUCcGCGGc -5'
13331 5' -61.1 NC_003409.1 + 49328 0.66 0.60731
Target:  5'- gUGCAUGugacccGGCC-UGCGGUcccaGGGUGCg- -3'
miRNA:   3'- -ACGUACu-----CCGGaACGCCG----UCCGCGgc -5'
13331 5' -61.1 NC_003409.1 + 46785 0.67 0.547466
Target:  5'- cGUAcugGAGGUCUguagugcugGUGGCGGGgGCCc -3'
miRNA:   3'- aCGUa--CUCCGGAa--------CGCCGUCCgCGGc -5'
13331 5' -61.1 NC_003409.1 + 20190 0.68 0.527901
Target:  5'- aGCGUGcGGUCagaGUGGUGGGCGUCa -3'
miRNA:   3'- aCGUACuCCGGaa-CGCCGUCCGCGGc -5'
13331 5' -61.1 NC_003409.1 + 58970 0.7 0.417284
Target:  5'- gGUAUuGGGuCCUcGgGGCGGGCGUCGa -3'
miRNA:   3'- aCGUAcUCC-GGAaCgCCGUCCGCGGC- -5'
13331 5' -61.1 NC_003409.1 + 31171 0.7 0.412125
Target:  5'- gGCGUGGGGCCUguaguguggaucuacUGCGGCuGcUGCUGc -3'
miRNA:   3'- aCGUACUCCGGA---------------ACGCCGuCcGCGGC- -5'
13331 5' -61.1 NC_003409.1 + 55988 0.7 0.408707
Target:  5'- cGUggGAGGUCgcGCGGCuGGCGCa- -3'
miRNA:   3'- aCGuaCUCCGGaaCGCCGuCCGCGgc -5'
13331 5' -61.1 NC_003409.1 + 133217 0.7 0.400241
Target:  5'- cGCAUGAcccGGCCccgGUGGUgaggcaccugcAGGCGCUGg -3'
miRNA:   3'- aCGUACU---CCGGaa-CGCCG-----------UCCGCGGC- -5'
13331 5' -61.1 NC_003409.1 + 123110 0.7 0.39023
Target:  5'- gGCGUGAGGCUUcugagcuuacugGCcacuaacaGGCAGGCGCUc -3'
miRNA:   3'- aCGUACUCCGGAa-----------CG--------CCGUCCGCGGc -5'
13331 5' -61.1 NC_003409.1 + 101065 1.08 0.00093
Target:  5'- cUGCAUGAGGCCUUGCGGCAGGCGCCGu -3'
miRNA:   3'- -ACGUACUCCGGAACGCCGUCCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.