miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13335 5' -59.2 NC_003409.1 + 106029 0.66 0.731152
Target:  5'- cACGCGAGGcGAUCCuaauCCCUUcGGCGu -3'
miRNA:   3'- cUGCGCUCCuUUGGG----GGGAGaCCGUu -5'
13335 5' -59.2 NC_003409.1 + 91584 0.66 0.721287
Target:  5'- -uUGC-AGGGGACaCCCCCUUgccuUGGCAGc -3'
miRNA:   3'- cuGCGcUCCUUUG-GGGGGAG----ACCGUU- -5'
13335 5' -59.2 NC_003409.1 + 16478 0.66 0.69127
Target:  5'- uGCGC-AGGAAACgCCCgUCUGGgGg -3'
miRNA:   3'- cUGCGcUCCUUUGgGGGgAGACCgUu -5'
13335 5' -59.2 NC_003409.1 + 3311 0.67 0.640373
Target:  5'- ----aGGGGAAGCCUCCCUgCUgGGCAAu -3'
miRNA:   3'- cugcgCUCCUUUGGGGGGA-GA-CCGUU- -5'
13335 5' -59.2 NC_003409.1 + 109743 0.68 0.599484
Target:  5'- cGCGCGGGGAaaaacaGACgCgCUUCUGGCGu -3'
miRNA:   3'- cUGCGCUCCU------UUGgGgGGAGACCGUu -5'
13335 5' -59.2 NC_003409.1 + 38841 0.68 0.579154
Target:  5'- aGCGCGuGGAgcaauucugcgAAUCCCgauguuCCUCUGGCAAc -3'
miRNA:   3'- cUGCGCuCCU-----------UUGGGG------GGAGACCGUU- -5'
13335 5' -59.2 NC_003409.1 + 108150 0.7 0.499835
Target:  5'- cGCGCGAGGAAACCCagCgcaaaaUGGCAc -3'
miRNA:   3'- cUGCGCUCCUUUGGGggGag----ACCGUu -5'
13335 5' -59.2 NC_003409.1 + 105275 0.7 0.498872
Target:  5'- --aGCGAGGAAaauuugcguuucuGCCCUCUUgUGGCAGu -3'
miRNA:   3'- cugCGCUCCUU-------------UGGGGGGAgACCGUU- -5'
13335 5' -59.2 NC_003409.1 + 25004 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 24974 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 24944 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 24914 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 24854 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 24824 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 24794 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 24764 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 24884 0.71 0.43461
Target:  5'- uGGCGCGccGGGAUCCCCCUCcGGgGAg -3'
miRNA:   3'- -CUGCGCucCUUUGGGGGGAGaCCgUU- -5'
13335 5' -59.2 NC_003409.1 + 111992 1.06 0.00175
Target:  5'- cGACGCGAGGAAACCCCCCUCUGGCAAa -3'
miRNA:   3'- -CUGCGCUCCUUUGGGGGGAGACCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.