miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13336 5' -57.6 NC_003409.1 + 107024 0.66 0.814271
Target:  5'- ---cGUC-CAGGGCAuCUCGCAGcAGGGu -3'
miRNA:   3'- cacaCGGcGUUCCGU-GAGCGUC-UCCU- -5'
13336 5' -57.6 NC_003409.1 + 79372 0.67 0.739473
Target:  5'- ---cGCCGCGAGGCGCUgaCAGuaAGGGu -3'
miRNA:   3'- cacaCGGCGUUCCGUGAgcGUC--UCCU- -5'
13336 5' -57.6 NC_003409.1 + 47718 0.68 0.689329
Target:  5'- -cGUGCCGCAcGaGCGCcgugaGCAGAcGGAa -3'
miRNA:   3'- caCACGGCGUuC-CGUGag---CGUCU-CCU- -5'
13336 5' -57.6 NC_003409.1 + 90404 0.68 0.683207
Target:  5'- aUGUGUacuuaGCuGGGGCACUCgaggcccagaauguaGCAGGGGAa -3'
miRNA:   3'- cACACGg----CG-UUCCGUGAG---------------CGUCUCCU- -5'
13336 5' -57.6 NC_003409.1 + 118455 0.69 0.648285
Target:  5'- gGUGcGCCGCGccggguuccugGGGUGCggggUGCGGGGGAc -3'
miRNA:   3'- -CACaCGGCGU-----------UCCGUGa---GCGUCUCCU- -5'
13336 5' -57.6 NC_003409.1 + 93143 0.69 0.607029
Target:  5'- gGUGUGCaCGUguaauGGGCccugcaccugGCUCGUGGAGGGa -3'
miRNA:   3'- -CACACG-GCGu----UCCG----------UGAGCGUCUCCU- -5'
13336 5' -57.6 NC_003409.1 + 106461 0.71 0.50616
Target:  5'- -cGUGCUgacuucucuGCGAGGUAaaaUCGCAGAGGc -3'
miRNA:   3'- caCACGG---------CGUUCCGUg--AGCGUCUCCu -5'
13336 5' -57.6 NC_003409.1 + 73581 0.72 0.481032
Target:  5'- -gGUGCCGCAggcaaugccagcgcgGGGUAC-CGgAGGGGAg -3'
miRNA:   3'- caCACGGCGU---------------UCCGUGaGCgUCUCCU- -5'
13336 5' -57.6 NC_003409.1 + 33016 0.73 0.413132
Target:  5'- ---cGCCGCAAGGagcaGCcUGCAGGGGAg -3'
miRNA:   3'- cacaCGGCGUUCCg---UGaGCGUCUCCU- -5'
13336 5' -57.6 NC_003409.1 + 87634 0.75 0.323923
Target:  5'- -gGUGCCG-AAGGCGCUUGCGGGGc- -3'
miRNA:   3'- caCACGGCgUUCCGUGAGCGUCUCcu -5'
13336 5' -57.6 NC_003409.1 + 115938 1.08 0.001693
Target:  5'- gGUGUGCCGCAAGGCACUCGCAGAGGAg -3'
miRNA:   3'- -CACACGGCGUUCCGUGAGCGUCUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.