miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13337 3' -55.3 NC_003409.1 + 93798 0.66 0.919468
Target:  5'- -gCAGcCCAGGCCA--GUUCagUCUCCGg -3'
miRNA:   3'- caGUU-GGUCCGGUggUAAGg-AGAGGC- -5'
13337 3' -55.3 NC_003409.1 + 117573 0.66 0.913614
Target:  5'- uGUCAACCAGGgCACCc-UCCcccaCCGa -3'
miRNA:   3'- -CAGUUGGUCCgGUGGuaAGGaga-GGC- -5'
13337 3' -55.3 NC_003409.1 + 73882 0.66 0.907515
Target:  5'- cUCuGCC-GGCCAgCgCGUUCCUC-CCGg -3'
miRNA:   3'- cAGuUGGuCCGGU-G-GUAAGGAGaGGC- -5'
13337 3' -55.3 NC_003409.1 + 22590 0.66 0.907515
Target:  5'- -gCGACCagGGGUCGCCGcgcuuUUCCUCcCCa -3'
miRNA:   3'- caGUUGG--UCCGGUGGU-----AAGGAGaGGc -5'
13337 3' -55.3 NC_003409.1 + 7198 0.66 0.907515
Target:  5'- -cCAACCAGGgCACCAgUCUgcaggccaugCUCCc -3'
miRNA:   3'- caGUUGGUCCgGUGGUaAGGa---------GAGGc -5'
13337 3' -55.3 NC_003409.1 + 44120 0.66 0.907515
Target:  5'- aGUCAGCcCAGGCacuaaACCAagCUUUUCCc -3'
miRNA:   3'- -CAGUUG-GUCCGg----UGGUaaGGAGAGGc -5'
13337 3' -55.3 NC_003409.1 + 55186 0.66 0.894591
Target:  5'- gGUCAcaCAGGCCAUCuacagCCUC-CCGa -3'
miRNA:   3'- -CAGUugGUCCGGUGGuaa--GGAGaGGC- -5'
13337 3' -55.3 NC_003409.1 + 79915 0.67 0.880722
Target:  5'- --gAGCCAGGCCACCugg---CUCUGg -3'
miRNA:   3'- cagUUGGUCCGGUGGuaaggaGAGGC- -5'
13337 3' -55.3 NC_003409.1 + 47924 0.67 0.873443
Target:  5'- -cCAACaggAGGCCGCCAaagUCUCUgCCGa -3'
miRNA:   3'- caGUUGg--UCCGGUGGUaa-GGAGA-GGC- -5'
13337 3' -55.3 NC_003409.1 + 6790 0.67 0.858223
Target:  5'- aUCGGCaUAGaccGCCGCCAUUCCUUUgCCa -3'
miRNA:   3'- cAGUUG-GUC---CGGUGGUAAGGAGA-GGc -5'
13337 3' -55.3 NC_003409.1 + 49142 0.67 0.858223
Target:  5'- uUCGcACCAGGacggagccguCCACCAUUCC--UCCGg -3'
miRNA:   3'- cAGU-UGGUCC----------GGUGGUAAGGagAGGC- -5'
13337 3' -55.3 NC_003409.1 + 24201 0.67 0.84216
Target:  5'- gGUgGGCgGGGCC-CCA-UCCUC-CCGg -3'
miRNA:   3'- -CAgUUGgUCCGGuGGUaAGGAGaGGC- -5'
13337 3' -55.3 NC_003409.1 + 12420 0.67 0.841335
Target:  5'- -aCAugCuGGCCGCC-UUCCUCagcaugcUCCGc -3'
miRNA:   3'- caGUugGuCCGGUGGuAAGGAG-------AGGC- -5'
13337 3' -55.3 NC_003409.1 + 31382 0.68 0.82531
Target:  5'- gGUUGGCacgcaGGGCCACCGccgUCCUcCUCUGc -3'
miRNA:   3'- -CAGUUGg----UCCGGUGGUa--AGGA-GAGGC- -5'
13337 3' -55.3 NC_003409.1 + 25777 0.69 0.780166
Target:  5'- gGUCGuUCGGGCCcCCGUccggcUCgUCUCCGg -3'
miRNA:   3'- -CAGUuGGUCCGGuGGUA-----AGgAGAGGC- -5'
13337 3' -55.3 NC_003409.1 + 12352 0.71 0.649787
Target:  5'- ------gGGGCCACuCcgUCCUCUCCGg -3'
miRNA:   3'- caguuggUCCGGUG-GuaAGGAGAGGC- -5'
13337 3' -55.3 NC_003409.1 + 36542 0.73 0.526457
Target:  5'- -gCGACguGGUCGCCAUUcucacCCUCUCCa -3'
miRNA:   3'- caGUUGguCCGGUGGUAA-----GGAGAGGc -5'
13337 3' -55.3 NC_003409.1 + 104170 0.76 0.404129
Target:  5'- -aCGACUGGGCCACCAagaucUUCCagUCUCCa -3'
miRNA:   3'- caGUUGGUCCGGUGGU-----AAGG--AGAGGc -5'
13337 3' -55.3 NC_003409.1 + 117774 1.08 0.003479
Target:  5'- uGUCAACCAGGCCACCAUUCCUCUCCGc -3'
miRNA:   3'- -CAGUUGGUCCGGUGGUAAGGAGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.