miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13338 3' -48 NC_003409.1 + 78764 0.66 0.999492
Target:  5'- cGGAaacGGACGGGUCUUcggUGGGUg----- -3'
miRNA:   3'- -CCU---CCUGCCUAGAGa--ACCUAaaugug -5'
13338 3' -48 NC_003409.1 + 58869 0.66 0.999445
Target:  5'- cGGGGGAUGGAggagagggaUGGGUUUAUAa -3'
miRNA:   3'- -CCUCCUGCCUagaga----ACCUAAAUGUg -5'
13338 3' -48 NC_003409.1 + 36390 0.66 0.999367
Target:  5'- uGGGGGugGG-UCUg--GGAgggGCACu -3'
miRNA:   3'- -CCUCCugCCuAGAgaaCCUaaaUGUG- -5'
13338 3' -48 NC_003409.1 + 105778 0.66 0.999367
Target:  5'- uGGAGGACGuGGgugCaUUUGGAUgggGCAg -3'
miRNA:   3'- -CCUCCUGC-CUa--GaGAACCUAaa-UGUg -5'
13338 3' -48 NC_003409.1 + 33321 0.66 0.999216
Target:  5'- cGGAGGGCuGuUCUCgccUGGAgcaGCGCc -3'
miRNA:   3'- -CCUCCUGcCuAGAGa--ACCUaaaUGUG- -5'
13338 3' -48 NC_003409.1 + 22130 0.66 0.999035
Target:  5'- cGGGGGCguGGAUUUUUUGGGgugUugGCc -3'
miRNA:   3'- cCUCCUG--CCUAGAGAACCUaa-AugUG- -5'
13338 3' -48 NC_003409.1 + 93013 0.66 0.999035
Target:  5'- uGGGGACGGGgccUUCUggggaaaaugGGGUUUGCGa -3'
miRNA:   3'- cCUCCUGCCUa--GAGAa---------CCUAAAUGUg -5'
13338 3' -48 NC_003409.1 + 87999 0.67 0.998563
Target:  5'- uGGAGcaGGCGGAUCUCcgGGAacccgcCACg -3'
miRNA:   3'- -CCUC--CUGCCUAGAGaaCCUaaau--GUG- -5'
13338 3' -48 NC_003409.1 + 18328 0.67 0.998563
Target:  5'- cGGGGGugGGGaCUUguaccgGGAg--GCGCu -3'
miRNA:   3'- -CCUCCugCCUaGAGaa----CCUaaaUGUG- -5'
13338 3' -48 NC_003409.1 + 60877 0.67 0.998262
Target:  5'- cGAGGGCGGGuccuuUCUCUgcUGGugccccACGCg -3'
miRNA:   3'- cCUCCUGCCU-----AGAGA--ACCuaaa--UGUG- -5'
13338 3' -48 NC_003409.1 + 53208 0.7 0.982519
Target:  5'- cGGGGGCGGAUCgguguggcugcuguUCUUGGGcgUGgACu -3'
miRNA:   3'- cCUCCUGCCUAG--------------AGAACCUaaAUgUG- -5'
13338 3' -48 NC_003409.1 + 116842 0.7 0.981012
Target:  5'- --cGGugGGAUUUUcugUGGAUggGCACa -3'
miRNA:   3'- ccuCCugCCUAGAGa--ACCUAaaUGUG- -5'
13338 3' -48 NC_003409.1 + 67339 0.72 0.961714
Target:  5'- aGGGGuACGGGUCaguagaucagaguagUCUUGGggUUGCAUa -3'
miRNA:   3'- cCUCC-UGCCUAG---------------AGAACCuaAAUGUG- -5'
13338 3' -48 NC_003409.1 + 53887 0.72 0.95215
Target:  5'- cGGAGGACGGuccagCUCgcuGAUgUGCGCa -3'
miRNA:   3'- -CCUCCUGCCua---GAGaacCUAaAUGUG- -5'
13338 3' -48 NC_003409.1 + 24230 0.93 0.147104
Target:  5'- -uGGGACGGAUCUCUUGGAUUUACcCg -3'
miRNA:   3'- ccUCCUGCCUAGAGAACCUAAAUGuG- -5'
13338 3' -48 NC_003409.1 + 118758 1.15 0.007375
Target:  5'- cGGAGGACGGAUCUCUUGGAUUUACACg -3'
miRNA:   3'- -CCUCCUGCCUAGAGAACCUAAAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.