miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13339 3' -47.2 NC_003409.1 + 114885 0.66 0.999811
Target:  5'- cUCCCUAUGUGcGCcGUcgUGUCUugGg -3'
miRNA:   3'- -GGGGAUGUAUuCGuCAaaACGGAugC- -5'
13339 3' -47.2 NC_003409.1 + 134208 0.66 0.999811
Target:  5'- uCCCCauguCAUcAGGCGGUcugUGCC-ACGg -3'
miRNA:   3'- -GGGGau--GUA-UUCGUCAaa-ACGGaUGC- -5'
13339 3' -47.2 NC_003409.1 + 45972 0.66 0.999757
Target:  5'- aCCagggUGCAUGcGguGUUUUGCCUGg- -3'
miRNA:   3'- gGGg---AUGUAUuCguCAAAACGGAUgc -5'
13339 3' -47.2 NC_003409.1 + 14161 0.66 0.999718
Target:  5'- uCCCCUACGUGuucgucgacgcccCAGgua-GCCUGCGc -3'
miRNA:   3'- -GGGGAUGUAUuc-----------GUCaaaaCGGAUGC- -5'
13339 3' -47.2 NC_003409.1 + 3518 0.66 0.999689
Target:  5'- gCCCgUGCAaaagAGGUAGUgaaaauacuUUUGCCUcCGg -3'
miRNA:   3'- -GGGgAUGUa---UUCGUCA---------AAACGGAuGC- -5'
13339 3' -47.2 NC_003409.1 + 84584 0.66 0.999606
Target:  5'- uCCCCg----GGGCAGUgcUUGCCagGCGa -3'
miRNA:   3'- -GGGGauguaUUCGUCAa-AACGGa-UGC- -5'
13339 3' -47.2 NC_003409.1 + 84614 0.68 0.998521
Target:  5'- gUCCUGCGUAGcGCGGcaagcauucGCCUGCGc -3'
miRNA:   3'- gGGGAUGUAUU-CGUCaaaa-----CGGAUGC- -5'
13339 3' -47.2 NC_003409.1 + 61094 0.68 0.997921
Target:  5'- uCCCUUGCAUAccuuuGCGGUaugggucGCCUACc -3'
miRNA:   3'- -GGGGAUGUAUu----CGUCAaaa----CGGAUGc -5'
13339 3' -47.2 NC_003409.1 + 10056 0.69 0.995111
Target:  5'- gUCUUACAcgcagcuGCAGUUU-GCCUACGa -3'
miRNA:   3'- gGGGAUGUauu----CGUCAAAaCGGAUGC- -5'
13339 3' -47.2 NC_003409.1 + 73744 0.7 0.989786
Target:  5'- aCCCC-GCGcuGGCA---UUGCCUGCGg -3'
miRNA:   3'- -GGGGaUGUauUCGUcaaAACGGAUGC- -5'
13339 3' -47.2 NC_003409.1 + 25292 0.71 0.984882
Target:  5'- uUCCaUACuUGGGCAGUauugGCCUACGa -3'
miRNA:   3'- gGGG-AUGuAUUCGUCAaaa-CGGAUGC- -5'
13339 3' -47.2 NC_003409.1 + 49988 0.71 0.98073
Target:  5'- -aCCUGC-UGGGCGGUggUGUCUACc -3'
miRNA:   3'- ggGGAUGuAUUCGUCAaaACGGAUGc -5'
13339 3' -47.2 NC_003409.1 + 24094 0.79 0.75122
Target:  5'- aCgCCUACAUGGGCAGc-UUGuCCUACGg -3'
miRNA:   3'- -GgGGAUGUAUUCGUCaaAAC-GGAUGC- -5'
13339 3' -47.2 NC_003409.1 + 118862 0.96 0.107503
Target:  5'- aCCCCUACAUAAGCAGUUUguCCUACGg -3'
miRNA:   3'- -GGGGAUGUAUUCGUCAAAacGGAUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.