Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13339 | 3' | -47.2 | NC_003409.1 | + | 114885 | 0.66 | 0.999811 |
Target: 5'- cUCCCUAUGUGcGCcGUcgUGUCUugGg -3' miRNA: 3'- -GGGGAUGUAUuCGuCAaaACGGAugC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 118862 | 0.96 | 0.107503 |
Target: 5'- aCCCCUACAUAAGCAGUUUguCCUACGg -3' miRNA: 3'- -GGGGAUGUAUUCGUCAAAacGGAUGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 73744 | 0.7 | 0.989786 |
Target: 5'- aCCCC-GCGcuGGCA---UUGCCUGCGg -3' miRNA: 3'- -GGGGaUGUauUCGUcaaAACGGAUGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 84584 | 0.66 | 0.999606 |
Target: 5'- uCCCCg----GGGCAGUgcUUGCCagGCGa -3' miRNA: 3'- -GGGGauguaUUCGUCAa-AACGGa-UGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 3518 | 0.66 | 0.999689 |
Target: 5'- gCCCgUGCAaaagAGGUAGUgaaaauacuUUUGCCUcCGg -3' miRNA: 3'- -GGGgAUGUa---UUCGUCA---------AAACGGAuGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 45972 | 0.66 | 0.999757 |
Target: 5'- aCCagggUGCAUGcGguGUUUUGCCUGg- -3' miRNA: 3'- gGGg---AUGUAUuCguCAAAACGGAUgc -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 134208 | 0.66 | 0.999811 |
Target: 5'- uCCCCauguCAUcAGGCGGUcugUGCC-ACGg -3' miRNA: 3'- -GGGGau--GUA-UUCGUCAaa-ACGGaUGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 84614 | 0.68 | 0.998521 |
Target: 5'- gUCCUGCGUAGcGCGGcaagcauucGCCUGCGc -3' miRNA: 3'- gGGGAUGUAUU-CGUCaaaa-----CGGAUGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 61094 | 0.68 | 0.997921 |
Target: 5'- uCCCUUGCAUAccuuuGCGGUaugggucGCCUACc -3' miRNA: 3'- -GGGGAUGUAUu----CGUCAaaa----CGGAUGc -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 10056 | 0.69 | 0.995111 |
Target: 5'- gUCUUACAcgcagcuGCAGUUU-GCCUACGa -3' miRNA: 3'- gGGGAUGUauu----CGUCAAAaCGGAUGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 25292 | 0.71 | 0.984882 |
Target: 5'- uUCCaUACuUGGGCAGUauugGCCUACGa -3' miRNA: 3'- gGGG-AUGuAUUCGUCAaaa-CGGAUGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 49988 | 0.71 | 0.98073 |
Target: 5'- -aCCUGC-UGGGCGGUggUGUCUACc -3' miRNA: 3'- ggGGAUGuAUUCGUCAaaACGGAUGc -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 24094 | 0.79 | 0.75122 |
Target: 5'- aCgCCUACAUGGGCAGc-UUGuCCUACGg -3' miRNA: 3'- -GgGGAUGUAUUCGUCaaAAC-GGAUGC- -5' |
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13339 | 3' | -47.2 | NC_003409.1 | + | 14161 | 0.66 | 0.999718 |
Target: 5'- uCCCCUACGUGuucgucgacgcccCAGgua-GCCUGCGc -3' miRNA: 3'- -GGGGAUGUAUuc-----------GUCaaaaCGGAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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