miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13339 5' -45.7 NC_003409.1 + 49209 0.66 0.999958
Target:  5'- -aCGCAGGcgccuAUGaCUAgGAGGAAGAGc -3'
miRNA:   3'- aaGCGUCCuu---UGC-GAUaUUUCUUCUC- -5'
13339 5' -45.7 NC_003409.1 + 130926 0.66 0.999958
Target:  5'- gUUGCGGGGGACggugcugcccaGCUGggcccAGGGAGAGu -3'
miRNA:   3'- aAGCGUCCUUUG-----------CGAUau---UUCUUCUC- -5'
13339 5' -45.7 NC_003409.1 + 67817 0.66 0.999942
Target:  5'- -gCGCAGGggGCGCcacGAGGGcccuucaucAGGGu -3'
miRNA:   3'- aaGCGUCCuuUGCGauaUUUCU---------UCUC- -5'
13339 5' -45.7 NC_003409.1 + 87379 0.66 0.999942
Target:  5'- uUUCGCAuacccgggcgcGGggGCGCUGggcGGuuGAGg -3'
miRNA:   3'- -AAGCGU-----------CCuuUGCGAUauuUCuuCUC- -5'
13339 5' -45.7 NC_003409.1 + 4607 0.66 0.999942
Target:  5'- cUUGcCAGGAGAUGUgg-GGAGaAAGAGg -3'
miRNA:   3'- aAGC-GUCCUUUGCGauaUUUC-UUCUC- -5'
13339 5' -45.7 NC_003409.1 + 73585 0.66 0.999897
Target:  5'- -cCGCAGGcaaugccAGCGCgggGUAccgGAGggGAGu -3'
miRNA:   3'- aaGCGUCCu------UUGCGa--UAU---UUCuuCUC- -5'
13339 5' -45.7 NC_003409.1 + 80189 0.67 0.999703
Target:  5'- -aCGCGGGGAcGCGCcgccugAAAGggGAa -3'
miRNA:   3'- aaGCGUCCUU-UGCGaua---UUUCuuCUc -5'
13339 5' -45.7 NC_003409.1 + 16479 0.68 0.999059
Target:  5'- -gCGCAGGAAACGCccgucuGggGGc -3'
miRNA:   3'- aaGCGUCCUUUGCGauauuuCuuCUc -5'
13339 5' -45.7 NC_003409.1 + 58216 0.68 0.998839
Target:  5'- -cCGCAggcuuGGAAAUGCUAU--AGAAGAa -3'
miRNA:   3'- aaGCGU-----CCUUUGCGAUAuuUCUUCUc -5'
13339 5' -45.7 NC_003409.1 + 124525 0.68 0.998839
Target:  5'- --aGCAGGAGACGgU----GGAAGAGc -3'
miRNA:   3'- aagCGUCCUUUGCgAuauuUCUUCUC- -5'
13339 5' -45.7 NC_003409.1 + 134079 0.69 0.998576
Target:  5'- aUUGCAGGAGugGgCUAgaguGGAAGuGg -3'
miRNA:   3'- aAGCGUCCUUugC-GAUauu-UCUUCuC- -5'
13339 5' -45.7 NC_003409.1 + 126308 0.69 0.997898
Target:  5'- --aGCAGGAGACag-AUGAGGAGGAc -3'
miRNA:   3'- aagCGUCCUUUGcgaUAUUUCUUCUc -5'
13339 5' -45.7 NC_003409.1 + 60135 0.7 0.996967
Target:  5'- uUUCGcCAGGcgGCGCUGcgGcGGGAGAGc -3'
miRNA:   3'- -AAGC-GUCCuuUGCGAUa-UuUCUUCUC- -5'
13339 5' -45.7 NC_003409.1 + 27176 0.7 0.995719
Target:  5'- aUUC-UAGGAGACGCgc-AAAGggGGGg -3'
miRNA:   3'- -AAGcGUCCUUUGCGauaUUUCuuCUC- -5'
13339 5' -45.7 NC_003409.1 + 114974 0.72 0.985989
Target:  5'- -aCGCGGGGGugGgUGUGGAGcAGGGc -3'
miRNA:   3'- aaGCGUCCUUugCgAUAUUUCuUCUC- -5'
13339 5' -45.7 NC_003409.1 + 36508 0.72 0.98386
Target:  5'- aUUCGCAGGAuagcgguGGCGUUcguccgGAAGggGAGc -3'
miRNA:   3'- -AAGCGUCCU-------UUGCGAua----UUUCuuCUC- -5'
13339 5' -45.7 NC_003409.1 + 24161 0.78 0.84525
Target:  5'- cUUCGCcGGGAACGCUAUAAAaacGAGGGa -3'
miRNA:   3'- -AAGCGuCCUUUGCGAUAUUUc--UUCUC- -5'
13339 5' -45.7 NC_003409.1 + 118825 1.08 0.024496
Target:  5'- cUUCGCAGGAAACGCUAUAAAGAAGAGg -3'
miRNA:   3'- -AAGCGUCCUUUGCGAUAUUUCUUCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.