miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1334 3' -53 NC_001335.1 + 17035 0.66 0.813374
Target:  5'- cGGUGAGCauCGuGCCGAGCgUGCUcgccaGCGu -3'
miRNA:   3'- -CCAUUUGc-GC-CGGCUCG-ACGAaa---CGU- -5'
1334 3' -53 NC_001335.1 + 19595 0.66 0.813374
Target:  5'- aGGUAAugGCucaGUgaGAGCUGCaaggUGCAg -3'
miRNA:   3'- -CCAUUugCGc--CGg-CUCGACGaa--ACGU- -5'
1334 3' -53 NC_001335.1 + 51841 0.67 0.762956
Target:  5'- aGUGAgcagccuauGCGCGGCaCGGGCUGCc----- -3'
miRNA:   3'- cCAUU---------UGCGCCG-GCUCGACGaaacgu -5'
1334 3' -53 NC_001335.1 + 48117 0.67 0.749206
Target:  5'- aGGUAGACGCGGUCagcucccaggaacgGAGcCUGUguguugGCGu -3'
miRNA:   3'- -CCAUUUGCGCCGG--------------CUC-GACGaaa---CGU- -5'
1334 3' -53 NC_001335.1 + 13704 0.68 0.705685
Target:  5'- cGGUGAugGUGGCCGGGaaguagcccucgucgGUgaUGCGg -3'
miRNA:   3'- -CCAUUugCGCCGGCUCga-------------CGaaACGU- -5'
1334 3' -53 NC_001335.1 + 18611 0.68 0.686775
Target:  5'- --gGAGCGCGGCCc--CUGCUUcGCGu -3'
miRNA:   3'- ccaUUUGCGCCGGcucGACGAAaCGU- -5'
1334 3' -53 NC_001335.1 + 33470 0.69 0.653051
Target:  5'- ---cAGCGacauGGCCGAGCUGCggagguugGCAg -3'
miRNA:   3'- ccauUUGCg---CCGGCUCGACGaaa-----CGU- -5'
1334 3' -53 NC_001335.1 + 42285 0.69 0.607849
Target:  5'- cGUGacGACGCGGCagagGAGCUGCac-GCGc -3'
miRNA:   3'- cCAU--UUGCGCCGg---CUCGACGaaaCGU- -5'
1334 3' -53 NC_001335.1 + 24457 0.69 0.607849
Target:  5'- uGGUGAACGCGgacuucgacaGCCG-GUUGCccUGCGu -3'
miRNA:   3'- -CCAUUUGCGC----------CGGCuCGACGaaACGU- -5'
1334 3' -53 NC_001335.1 + 33846 0.7 0.562994
Target:  5'- aGGUuGAUGUGGCCGAGgUUGCacgGCu -3'
miRNA:   3'- -CCAuUUGCGCCGGCUC-GACGaaaCGu -5'
1334 3' -53 NC_001335.1 + 7133 0.7 0.551905
Target:  5'- cGGUGAuccACGCGGCUGAacGCgGCU-UGCc -3'
miRNA:   3'- -CCAUU---UGCGCCGGCU--CGaCGAaACGu -5'
1334 3' -53 NC_001335.1 + 17782 0.71 0.497616
Target:  5'- aGGaucuCGCGGCUGAGCUGUccaggGCGa -3'
miRNA:   3'- -CCauuuGCGCCGGCUCGACGaaa--CGU- -5'
1334 3' -53 NC_001335.1 + 16471 0.72 0.445851
Target:  5'- gGGUGAuCGCggucagcaucgGGCCGAGCUGCUg---- -3'
miRNA:   3'- -CCAUUuGCG-----------CCGGCUCGACGAaacgu -5'
1334 3' -53 NC_001335.1 + 32915 0.73 0.416273
Target:  5'- cGGU-GACGaCGGCCucGGCUGCUgUGCGc -3'
miRNA:   3'- -CCAuUUGC-GCCGGc-UCGACGAaACGU- -5'
1334 3' -53 NC_001335.1 + 4185 1.11 0.000987
Target:  5'- cGGUAAACGCGGCCGAGCUGCUUUGCAu -3'
miRNA:   3'- -CCAUUUGCGCCGGCUCGACGAAACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.