miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1334 5' -57.2 NC_001335.1 + 3098 0.66 0.607099
Target:  5'- aGC-GCCUCGCCaaGGcgagCGGCGg--GAGCu -3'
miRNA:   3'- -CGaCGGAGCGG--CCa---GCCGUacaCUUG- -5'
1334 5' -57.2 NC_001335.1 + 34277 0.66 0.585306
Target:  5'- --gGCCggcggugugCGCCGGUCGGCGcggaUGUcGAUg -3'
miRNA:   3'- cgaCGGa--------GCGGCCAGCCGU----ACAcUUG- -5'
1334 5' -57.2 NC_001335.1 + 31777 0.66 0.585306
Target:  5'- cGCUGCCUCGCgGGccugcuugcgCGGCAa------ -3'
miRNA:   3'- -CGACGGAGCGgCCa---------GCCGUacacuug -5'
1334 5' -57.2 NC_001335.1 + 17806 0.66 0.563666
Target:  5'- cCUGCCUCcaugccguuGCCGaaucccUCGGCG-GUGAACu -3'
miRNA:   3'- cGACGGAG---------CGGCc-----AGCCGUaCACUUG- -5'
1334 5' -57.2 NC_001335.1 + 19197 0.66 0.552925
Target:  5'- uCUGCUccucgCGCCGGUCGGUGUcGaUGAcGCa -3'
miRNA:   3'- cGACGGa----GCGGCCAGCCGUA-C-ACU-UG- -5'
1334 5' -57.2 NC_001335.1 + 20536 0.67 0.531636
Target:  5'- aGCUcGCCgCGCuCGGcgCGGUcgGUGGAg -3'
miRNA:   3'- -CGA-CGGaGCG-GCCa-GCCGuaCACUUg -5'
1334 5' -57.2 NC_001335.1 + 33815 0.69 0.421166
Target:  5'- --gGUCUUGCCGGcCGGCGUcacGAACg -3'
miRNA:   3'- cgaCGGAGCGGCCaGCCGUAca-CUUG- -5'
1334 5' -57.2 NC_001335.1 + 12884 0.72 0.26699
Target:  5'- aGCuUGCCUUGCgacaGGUCGGCcUG-GAGCu -3'
miRNA:   3'- -CG-ACGGAGCGg---CCAGCCGuACaCUUG- -5'
1334 5' -57.2 NC_001335.1 + 16188 0.73 0.240987
Target:  5'- aGCaGCUcCGCUGGUCGGCAUcGUGGc- -3'
miRNA:   3'- -CGaCGGaGCGGCCAGCCGUA-CACUug -5'
1334 5' -57.2 NC_001335.1 + 2300 0.73 0.228796
Target:  5'- gGCUGaaCUUCGCCgcgaGGUCGGCAaggaGUGAGCu -3'
miRNA:   3'- -CGAC--GGAGCGG----CCAGCCGUa---CACUUG- -5'
1334 5' -57.2 NC_001335.1 + 39428 0.75 0.16044
Target:  5'- cGCUGUCUCGCUGGUgGGUucgaggaauggugaaGUGAGCg -3'
miRNA:   3'- -CGACGGAGCGGCCAgCCGua-------------CACUUG- -5'
1334 5' -57.2 NC_001335.1 + 34856 0.77 0.119428
Target:  5'- uGCUGCCg-GCaGGUCGGCAucUGUGGGCc -3'
miRNA:   3'- -CGACGGagCGgCCAGCCGU--ACACUUG- -5'
1334 5' -57.2 NC_001335.1 + 4150 1.1 0.000487
Target:  5'- gGCUGCCUCGCCGGUCGGCAUGUGAACc -3'
miRNA:   3'- -CGACGGAGCGGCCAGCCGUACACUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.