Results 1 - 20 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 119638 | 1.11 | 0.002162 |
Target: 5'- cCAUUGGCCCAUCCGGCCGACCAAUCCc -3' miRNA: 3'- -GUAACCGGGUAGGCCGGCUGGUUAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 23371 | 1.11 | 0.002162 |
Target: 5'- cCAUUGGCCCAUCCGGCCGACCAAUCCc -3' miRNA: 3'- -GUAACCGGGUAGGCCGGCUGGUUAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 54964 | 0.73 | 0.515716 |
Target: 5'- --cUGGCCgCAaggCCGGCCGGCCAcUgCa -3' miRNA: 3'- guaACCGG-GUa--GGCCGGCUGGUuAgG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 119679 | 0.72 | 0.575774 |
Target: 5'- cCAUUGGUCCG-CCGGCCcgUCAAUCa -3' miRNA: 3'- -GUAACCGGGUaGGCCGGcuGGUUAGg -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 23330 | 0.72 | 0.575775 |
Target: 5'- cCAUUGGUCCG-CCGGCCcgUCAAUCa -3' miRNA: 3'- -GUAACCGGGUaGGCCGGcuGGUUAGg -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 16635 | 0.71 | 0.626979 |
Target: 5'- --cUGGCCCcgCgCGGCCG-CCAgguaGUCUg -3' miRNA: 3'- guaACCGGGuaG-GCCGGCuGGU----UAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 68097 | 0.7 | 0.7286 |
Target: 5'- ---gGGCCCGUCUGGCCagaGGCC--UCg -3' miRNA: 3'- guaaCCGGGUAGGCCGG---CUGGuuAGg -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 54787 | 0.69 | 0.739431 |
Target: 5'- ---aGGUCCAgccaaucugcaguggCCGGCCGGCCuugcggCCa -3' miRNA: 3'- guaaCCGGGUa--------------GGCCGGCUGGuua---GG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 79609 | 0.68 | 0.795264 |
Target: 5'- --gUGGCCUcgggguUCCuuggcGGCCGGCCAcuggaggcGUCCg -3' miRNA: 3'- guaACCGGGu-----AGG-----CCGGCUGGU--------UAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 108615 | 0.68 | 0.795264 |
Target: 5'- uGUUGGCCa--CCauagacacgguGGCCGGCCAggCCc -3' miRNA: 3'- gUAACCGGguaGG-----------CCGGCUGGUuaGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 97687 | 0.68 | 0.821787 |
Target: 5'- cCAUUGGCCuCAcCCGGCUugcagaGACCua-CCu -3' miRNA: 3'- -GUAACCGG-GUaGGCCGG------CUGGuuaGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 72145 | 0.68 | 0.830291 |
Target: 5'- ---gGGagCGUCCGGCCGucuCCGcUCCg -3' miRNA: 3'- guaaCCggGUAGGCCGGCu--GGUuAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 95939 | 0.67 | 0.838613 |
Target: 5'- --gUGuGCCCA-CUGGCUG-CCAAUCa -3' miRNA: 3'- guaAC-CGGGUaGGCCGGCuGGUUAGg -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 108786 | 0.67 | 0.838613 |
Target: 5'- ---gGGCCUggCCGGCC-ACCGuGUCUa -3' miRNA: 3'- guaaCCGGGuaGGCCGGcUGGU-UAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 112151 | 0.67 | 0.854681 |
Target: 5'- ---aGGCCCugcAUCCGGC--ACCAcgCCc -3' miRNA: 3'- guaaCCGGG---UAGGCCGgcUGGUuaGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 90148 | 0.67 | 0.869937 |
Target: 5'- --cUGGCCggCGUCUGgacGCCGGCggCAGUCCa -3' miRNA: 3'- guaACCGG--GUAGGC---CGGCUG--GUUAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 107529 | 0.67 | 0.869937 |
Target: 5'- gGUUcGCCCcuUCCGG-CGGCCGuggGUCCa -3' miRNA: 3'- gUAAcCGGGu-AGGCCgGCUGGU---UAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 132946 | 0.66 | 0.884331 |
Target: 5'- ---cGGC--AUCCGGaCCGGCCGcgggAUCCg -3' miRNA: 3'- guaaCCGggUAGGCC-GGCUGGU----UAGG- -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 11860 | 0.66 | 0.884331 |
Target: 5'- ---aGGCCC-UCCaGGCUGGCUucGGUCg -3' miRNA: 3'- guaaCCGGGuAGG-CCGGCUGG--UUAGg -5' |
|||||||
13340 | 5' | -55.8 | NC_003409.1 | + | 39963 | 0.66 | 0.889157 |
Target: 5'- gAUUGGaCUCAggCGGCCGAgacucggagaaagcCCGGUCUg -3' miRNA: 3'- gUAACC-GGGUagGCCGGCU--------------GGUUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home