miRNA: 3'- -GUAACCGGGUaGGCCGGcuGGUUAGg -5'
miRNA: 3'- guaACCGG-GUa--GGCCGGCUGGUuAgG- -5'
miRNA: 3'- -GUAACCGGGUAGGCCGGCUGGUUAGG- -5'
miRNA: 3'- -GUAACCGGGUAGGCCGGCUGGUUAGG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13340 | 5' | -55.8 | NC_003409.1 | + | 119679 | 0.72 | 0.575774 |
|
Target: 5'- cCAUUGGUCCG-CCGGCCcgUCAAUCa -3' miRNA: 3'- -GUAACCGGGUaGGCCGGcuGGUUAGg -5' |
|||||||
| 13340 | 5' | -55.8 | NC_003409.1 | + | 54964 | 0.73 | 0.515716 |
|
Target: 5'- --cUGGCCgCAaggCCGGCCGGCCAcUgCa -3' miRNA: 3'- guaACCGG-GUa--GGCCGGCUGGUuAgG- -5' |
|||||||
| 13340 | 5' | -55.8 | NC_003409.1 | + | 23371 | 1.11 | 0.002162 |
|
Target: 5'- cCAUUGGCCCAUCCGGCCGACCAAUCCc -3' miRNA: 3'- -GUAACCGGGUAGGCCGGCUGGUUAGG- -5' |
|||||||
| 13340 | 5' | -55.8 | NC_003409.1 | + | 119638 | 1.11 | 0.002162 |
|
Target: 5'- cCAUUGGCCCAUCCGGCCGACCAAUCCc -3' miRNA: 3'- -GUAACCGGGUAGGCCGGCUGGUUAGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home